MmuINT0103465 @ mm9
Intron Retention
Gene
ENSMUSG00000020908 | Myh3
Description
myosin, heavy polypeptide 3, skeletal muscle, embryonic [Source:MGI Symbol;Acc:MGI:1339709]
Coordinates
chr11:66905385-66906075:+
Coord C1 exon
chr11:66905385-66905640
Coord A exon
chr11:66905641-66905832
Coord C2 exon
chr11:66905833-66906075
Length
192 bp
Sequences
Splice sites
5' ss Seq
GCTGTATGT
5' ss Score
5.1
3' ss Seq
CTTGTGATTTCTTTTTAAAGGAG
3' ss Score
7.62
Exon sequences
Seq C1 exon
GGAGTCCATCTTCTGCATCCAGTACAACATCCGTGCCTTCATGAACGTCAAGCACTGGCCCTGGATGAAACTCTTCTTCAAGATCAAGCCCCTGCTGAAGAGCGCGGAGACTGAGAAGGAGATGGCCACCATGAAGGAGGAGTTCCAGAAAACCAAGGATGAGCTGGCTAAGTCGGAGGCAAAGAGGAAGGAGCTAGAGGAGAAGCTCGTCACTTTGGTACAGGAGAAGAATGACCTGCAACTTCAAGTACAGGCT
Seq A exon
GTATGTCTTTAGGAATCTTGCTTTTTCAGATCCTAGATATGATTACGATGTTAGCAAATCTGGATTAACTGAGGGTGGGGCATGGGTGGGTGTTGGGTTTTTCTTGGAGTGCTTCATGGAGGATTTCACAAAGAAAGATGGCAGTATCTCAAACCTTCGCTCCTTAAAGGGACTTGTGATTTCTTTTTAAAG
Seq C2 exon
GAGAGTGAAAATTTGTTGGATGCTGAGGAACGATGCGACCAGCTGATCAAAGCCAAGTTCCAGCTGGAAGCCAAAATCAAAGAGGTGACAGAGAGAGCCGAGGACGAGGAGGAGATCAACGCGGAGCTCACGGCCAAGAAGAGGAAGCTGGAGGACGAGTGCTCGGAGCTGAAGAAGGACATCGATGACCTTGAGCTGACACTGGCCAAGGTTGAGAAGGAGAAGCACGCCACAGAGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020908-Myh3:NM_001099635:22
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.116 A=NA C2=0.284
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PU(27.2=61.6)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(41.0=100),PF0157614=Myosin_tail_1=PU(29.1=48.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGGAGATGGCCACCATGA
R:
CGGCTCTCTCTGTCACCTCTT
Band lengths:
243-435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: