RnoINT0096478 @ rn6
Intron Retention
Gene
ENSRNOG00000046276 | Myh3
Description
myosin heavy chain 3 [Source:RGD Symbol;Acc:3138]
Coordinates
chr10:53635795-53636486:+
Coord C1 exon
chr10:53635795-53636050
Coord A exon
chr10:53636051-53636243
Coord C2 exon
chr10:53636244-53636486
Length
193 bp
Sequences
Splice sites
5' ss Seq
GCGGTATGT
5' ss Score
9.45
3' ss Seq
ATTGTGATTTCTTTTTAAAGGAG
3' ss Score
7.01
Exon sequences
Seq C1 exon
GGAATCCATCTTCTGCATCCAGTACAACATCCGCGCCTTCATGAACGTCAAGCACTGGCCCTGGATGAAACTCTTCTTCAAGATCAAGCCCCTGCTGAAGAGCGCCGAGACGGAGAAGGAGATGGCCACCATGAAGGAGGAGTTCCAGAAGACCAAGGACGAGCTCGCCAAGTCGGAGGCAAAGAGGAAGGAGCTGGAGGAGAAGCTGGTCACTCTGGTACAAGAGAAGAACGACCTGCAGCTCCAAGTACAGGCG
Seq A exon
GTATGTCCTTAGGACTCTTGCTTTTTCAAATCCGAGATTGGATTACGATTTTAGGAAATCTGGATTAACCCGAGGGCGGGGCATGGGTGGGCGTTGGGTTTTTCTTGGAGTGCTTCATGGAGGATTTCACAAAGAAAGATGGCAGTGTTTCAAACCTTCGCTCCTTAAAGGGAATTGTGATTTCTTTTTAAAG
Seq C2 exon
GAGAGTGAGAATTTGCTGGATGCCGAGGAGCGATGCGACCAGCTGATCAAAGCCAAGTTCCAGCTGGAGGCCAAAATTAAAGAGGTGACCGAAAGAGCTGAGGATGAGGAGGAGATCAACGCCGAGCTCACGGCCAAGAAGAGGAAGCTGGAGGACGAGTGCTCGGAGCTGAAGAAGGACATCGATGACCTTGAGCTGACACTGGCCAAGGTTGAGAAGGAGAAGCACGCCACGGAGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046276:ENSRNOT00000004147:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.116 A=NA C2=0.284
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PU(27.2=61.6)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(41.0=100),PF0157614=Myosin_tail_1=PU(29.1=48.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAAGAACGACCTGCAGCTC
R:
TCTCCTTCTCAACCTTGGCCA
Band lengths:
256-449
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]