GgaINT0127424 @ galGal3
Intron Retention
Description
NA
Coordinates
chr18:599179-599689:-
Coord C1 exon
chr18:599447-599689
Coord A exon
chr18:599356-599446
Coord C2 exon
chr18:599179-599355
Length
91 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGA
5' ss Score
9.11
3' ss Seq
TTACTCCCTTCTTGTCAAAGGTG
3' ss Score
8.04
Exon sequences
Seq C1 exon
GAAGCTGATGCATTGGCTGATGCTGAGGAAAGATGTGACCAGCTCATCAAAACCAAAATCCAGCTGGAAGCCAAAGTAAAGGAGGTGACAGAACGGGCTGAGGATGAGGAGGAAATTAATGCTGAACTGACAGCCAAGAAGAGAAAACTGGAGGATGAATGTTCAGAACTGAAGAAAGACATAGATGACCTGGAGTTAACATTGGCCAAAGTTGAGAAGGAAAAGCATGCCACTGAAAACAAG
Seq A exon
GTATGAGGAAGAAGATGTCGCTCACTTTTGTTGCACAGTATTAAACTGTAAACAACATTTTTTATCTACACTTACTCCCTTCTTGTCAAAG
Seq C2 exon
GTGAAAAACCTCACAGAGGAGATGGCAGCCCTGGATGAGACCATTGTGAAGCTGACAAAAGAGAAGAAAGCCCTCCAAGAGGCCCATCAGCAGACACTGGATGACCTGCAGGCTGAAGAGGACAAAGTCAATACGCTGACCAAAGCTAAAACCAAGCTGGAACAGCAAGTGGATGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023705:ENSGALT00000001424:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.383 A=NA C2=0.661
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(40.6=100),PF0157614=Myosin_tail_1=PU(30.1=49.4)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(29.4=100),PF0157614=Myosin_tail_1=FE(43.6=100),PF0003816=Filament=PU(6.7=32.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGGAGTTAACATTGGCCA
R:
CTCTTCAGCCTGCAGGTCATC
Band lengths:
176-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]