BtaINT0097445 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011803 | MYHC-EMBRYONIC
Description
myosin-3 [Source:RefSeq peptide;Acc:NP_001095305]
Coordinates
chr19:30237919-30238421:-
Coord C1 exon
chr19:30238179-30238421
Coord A exon
chr19:30238096-30238178
Coord C2 exon
chr19:30237919-30238095
Length
83 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAC
5' ss Score
7.56
3' ss Seq
TGCTTGTGGCATCTTCTTAGGTT
3' ss Score
7.09
Exon sequences
Seq C1 exon
GAAAGTGAAAACCTGTTGGATGCAGAGGAAAGATGTGATCAGCTGATCAAAGCCAAGTTCCAGCTGGAGGCTAAGATCAAGGAAGTGACAGAGAGAGCTGAGGATGAGGAAGAGATGAATGCTGAGCTGACGGCCAAGAAGAGGAAACTGGAGGACGAATGTTCAGAACTGAAGAAAGACATAGATGACCTTGAGCTGACACTGGCCAAGGTTGAGAAGGAGAAACATGCCACAGAGAATAAG
Seq A exon
GTACACCCTGGGTCTTTCCACTGCTATGGTCAGTACAAACCCAACTTGATCTTTTCTTATAATTGCTTGTGGCATCTTCTTAG
Seq C2 exon
GTTAAGAACCTCACTGAAGAACTTGCCGGGTTGGATGAAACCATTGCAAAGTTAACCAGAGAGAAGAAGGCCCTCCAGGAGGCCCACCAGCAGACCCTGGATGACCTGCAGGCAGAAGAGGACAAAGTCAATTCTTTGAGCAAAATCAAGAGCAAACTGGAACAGCAGGTGGATGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011803:ENSBTAT00000001120:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=NA C2=0.373
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(41.9=100),PF0157614=Myosin_tail_1=PU(28.6=46.9)
A:
NA
C2:
PF0157614=Myosin_tail_1=PD(28.8=93.2),PF0157614=Myosin_tail_1=FE(43.6=100),PF0003816=Filament=PU(6.6=30.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGACACTGGCCAAGGTTGAG
R:
CTCTTCTGCCTGCAGGTCATC
Band lengths:
168-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development