RnoINT0096479 @ rn6
Intron Retention
Gene
ENSRNOG00000046276 | Myh3
Description
myosin heavy chain 3 [Source:RGD Symbol;Acc:3138]
Coordinates
chr10:53636244-53636735:+
Coord C1 exon
chr10:53636244-53636486
Coord A exon
chr10:53636487-53636558
Coord C2 exon
chr10:53636559-53636735
Length
72 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAC
5' ss Score
7.56
3' ss Seq
GCAAGCTCGGCTTCTTTTAGGTA
3' ss Score
4.89
Exon sequences
Seq C1 exon
GAGAGTGAGAATTTGCTGGATGCCGAGGAGCGATGCGACCAGCTGATCAAAGCCAAGTTCCAGCTGGAGGCCAAAATTAAAGAGGTGACCGAAAGAGCTGAGGATGAGGAGGAGATCAACGCCGAGCTCACGGCCAAGAAGAGGAAGCTGGAGGACGAGTGCTCGGAGCTGAAGAAGGACATCGATGACCTTGAGCTGACACTGGCCAAGGTTGAGAAGGAGAAGCACGCCACGGAGAACAAG
Seq A exon
GTACACACGTTCTTCTTGCGGTCTCTCTTCAGCTTGATGTATTCACTGCTAAGCAAGCTCGGCTTCTTTTAG
Seq C2 exon
GTAAAAAACCTTACCGAAGAACTGGCAGGCCTGGATGAAACTATTGCAAAGCTAACACGGGAGAAGAAGGCCCTCCAAGAGGCCCACCAGCAGACCCTGGACGACCTCCAGGCTGAGGAAGACAAGGTCAATTCTCTGAGCAAGCTCAAGAGCAAGCTGGAGCAGCAAGTGGATGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046276:ENSRNOT00000004147:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.284 A=NA C2=0.424
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(41.0=100),PF0157614=Myosin_tail_1=PU(29.1=48.1)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(29.7=100),PF0157614=Myosin_tail_1=FE(43.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGAGGAAGCTGGAGGACGA
R:
GCCTTCTTCTCCCGTGTTAGC
Band lengths:
177-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]