MmuINT0103466 @ mm10
Intron Retention
Gene
ENSMUSG00000020908 | Myh3
Description
myosin, heavy polypeptide 3, skeletal muscle, embryonic [Source:MGI Symbol;Acc:MGI:1339709]
Coordinates
chr11:67092331-67093313:+
Coord C1 exon
chr11:67092331-67092573
Coord A exon
chr11:67092574-67093136
Coord C2 exon
chr11:67093137-67093313
Length
563 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTC
5' ss Score
7.46
3' ss Seq
CCCGCTGCGGCTTCTTTTAGGTC
3' ss Score
9.69
Exon sequences
Seq C1 exon
GAGAGTGAAAATTTGTTGGATGCTGAGGAACGATGCGACCAGCTGATCAAAGCCAAGTTCCAGCTGGAAGCCAAAATCAAAGAGGTGACAGAGAGAGCCGAGGACGAGGAGGAGATCAACGCGGAGCTCACGGCCAAGAAGAGGAAGCTGGAGGACGAGTGCTCGGAGCTGAAGAAGGACATCGATGACCTTGAGCTGACACTGGCCAAGGTTGAGAAGGAGAAGCACGCCACAGAGAACAAG
Seq A exon
GTACTCGCTCTTCTTGCAATTTCCAGCTCCATGTACTCAGTGCTAACCAAGCTCCTCCTCCTCCTCTTCTTCTTCCTCTTCTTCTTCCTTCTTCCTCTTCCTCCTCTTCTTTCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCCTTCTTCTTCTTCCTCCTCCTCCTCCTCCTTCTTTCTTCTTTTTCTTCTCCTTCTTCTTCTTCTTCTTCCTCCTCCTCCTTCTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCCTCCTCCTTCCTCCTCCTCCTCCTTCTTCTTTTTCTTCCTCCTCCTTCCTCCTCCTCCTTCTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCCCTCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTATTCTTCCCGCTGCGGCTTCTTTTAG
Seq C2 exon
GTCAAAAACCTTACCGAAGAACTGGCAGGCCTGGATGAAACTATTGCAAAGCTAACACGGGAGAAGAAGGCCCTCCAAGAGGCCCACCAGCAGACCCTGGACGACCTCCAGGCTGAAGAAGACAAGGTCAATTCTCTGAGCAAGCTCAAGAGCAAGCTGGAGCAGCAAGTGGATGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020908:ENSMUST00000108689:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.284 A=NA C2=0.424
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(41.0=100),PF0157614=Myosin_tail_1=PU(29.1=48.1)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(29.6=100),PF0157614=Myosin_tail_1=PU(43.5=50.8),PF0003816=Filament=PU(6.6=30.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAGCCAAGTTCCAGCTGGA
R:
TCCAGCTTGCTCTTGAGCTTG
Band lengths:
357-920
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types