GgaINT0127428 @ galGal3
Intron Retention
Description
NA
Coordinates
chr18:598297-598735:-
Coord C1 exon
chr18:598731-598735
Coord A exon
chr18:598687-598730
Coord C2 exon
chr18:598297-598686
Length
44 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
3' ss Seq
GGGTCCCTGCTGTTCCCCAGGCC
3' ss Score
7
Exon sequences
Seq C1 exon
GTGAG
Seq A exon
GTAGGAGAAGGACATGGGTGTGAAGGGTCCCTGCTGTTCCCCAG
Seq C2 exon
GCCCGTATTGAAGAACTGGAGGAGGAAATTGAGGCAGAGCGAACCTCTCGGGCAAAAGCAGAGAAGCACCGAGCTGACCTCTCCAGGGAGCTGGAGGAGATCAGTGGGCGCCTGGAGGAAGCAGGAGGGGCTACAGCAGCTCAGATCGAGATGAACAAGAAGCGTGAGGCAGAATTTCAGAAGATGCGCCGTGACCTCGAAGAGGCCACGCTGCAGCACGAAGCCACGGCTGCTGCCCTGCGGAAGAAGCATGCGGACAGCACAGCGGAGCTTGGGGAGCAGATTGACAACCTGCAACGAGTCAAGCAGAAGCTGGAGAAGGAGAAGAGTGAGCTGAAGATGGAGATTGATGACTTGGCCAGCAACATGGAGTCTGTCTCCAAAGCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023705:ENSGALT00000001424:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.958
Domain overlap (PFAM):
C1:
PF0003816=Filament=FE(0.3=100),PF0157614=Myosin_tail_1=FE(0.1=100)
A:
NA
C2:
PF0003816=Filament=FE(45.3=100),PF0157614=Myosin_tail_1=FE(15.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]