BtaINT0097448 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011803 | MYHC-EMBRYONIC
Description
myosin-3 [Source:RefSeq peptide;Acc:NP_001095305]
Coordinates
chr19:30236742-30237586:-
Coord C1 exon
chr19:30237496-30237586
Coord A exon
chr19:30237132-30237495
Coord C2 exon
chr19:30236742-30237131
Length
364 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
3' ss Seq
GGGATGGCCTGCCCGCACAGGCC
3' ss Score
3.99
Exon sequences
Seq C1 exon
GAAAGATTTTGAGTACTGTCAACTGCAAAGCAAAGTGGAAGATGAGCAGACTCTGGGCCTGCAGTTTCAGAAGAAAATCAAAGAGCTACAG
Seq A exon
GTAGGGGGCGCTTGGGACTTTGCTTTCACACTGGATCACACACGGTGAGCCGGAGTGTCTGCTGTGCATTATCAGAGCAAGGGGCAGGACCGTGGGCCTCGTCTGTCCAGGCCGACAGTAGCAATGAACAGTTTTTCCACAATTTAAACAAAATACGTAACTGAAGTATTTCATATCAACCCGTAGTCAGAGTGGAGGATACTCATTATCAGCCGCTGCAGGAAAGGCTCATGTCAGGGGAAATTCTCAGTGTTGGTATTGCTCCGGGAGCAGCCCAAGACTTGGTTGGTCTAATGGGAGGGGAAACCAGCCTGTTCTTGACACTGGGAGTCAGGATTCTCCCGGGGATGGCCTGCCCGCACAG
Seq C2 exon
GCCCGGATCGAGGAGCTGGAAGAAGAGATCGAGGCCGAGAGGGCGACCCGCGCCAAGACGGAGAAGCAGCGCAGCGACTACGCCCGGGAGCTGGAGGAGCTGAGCGAGCGACTGGAGGAGGCAGGGGGCGTCACGTCCACCCAGATCGAGCTGAACAAGAAGCGGGAGGCCGAGTTCCTGAAGCTGCGCAGGGACCTGGAGGAGGCCACCCTGCAACACGAGGCCATGGTGGCCGCTCTTCGCAAGAAGCATGCGGACAGCGTGGCAGAGCTGGGGGAGCAGATCGACAACCTGCAGAGGGTTAAGCAGAAGCTGGAGAAGGAGAAGAGCGAGTTCAAGCTGGAACTCGACGACCTGGGCAGCAACGTGGAGAGCGTGTCCAAGTCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011803:ENSBTAT00000001120:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.315
Domain overlap (PFAM):
C1:
PF0003816=Filament=FE(10.8=100),PF0157614=Myosin_tail_1=FE(6.0=100),PF131661=AAA_13=PU(5.5=35.5)
A:
NA
C2:
PF0003816=Filament=FE(46.6=100),PF0157614=Myosin_tail_1=FE(25.8=100),PF131661=AAA_13=FE(64.2=100),PF104734=CENP-F_leu_zip=PU(41.1=44.6),PF045827=Reo_sigmaC=PU(29.9=33.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCCTGCAGTTTCAGAAGAA
R:
TCTGCTTAACCCTCTGCAGGT
Band lengths:
347-711
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development