BtaEX6087219 @ bosTau6

Exon Skipping

Gene

ENSBTAG00000011803 | MYHC-EMBRYONIC

Description

myosin-3 [Source:RefSeq peptide;Acc:NP_001095305]

Coordinates

chr19:30236742-30237811:-

Coord C1 exon

chr19:30237666-30237811

Coord A exon

chr19:30237496-30237586

Coord C2 exon

chr19:30236742-30237131

Length

91 bp

Sequences

Splice sites

3' ss Seq

TTCTGCATTTCCCTTCACAGGAA

3' ss Score

11.18

5' ss Seq

CAGGTAGGG

5' ss Score

9.46

Exon sequences

Seq C1 exon

CTGGAAAGCTCCCTGGAACAAGAAAAGAAGCTCCGTGTAGACCTGGAAAGGAACAAAAGGAAGCTGGAGGGAGACCTGAAGCTCGCCCAGGAGTCCATCCTGGATCTGGAGAACGACAAGCAGCAGCTGGATGAGCGGCTCAAGAA

Seq A exon

GAAAGATTTTGAGTACTGTCAACTGCAAAGCAAAGTGGAAGATGAGCAGACTCTGGGCCTGCAGTTTCAGAAGAAAATCAAAGAGCTACAG

Seq C2 exon

GCCCGGATCGAGGAGCTGGAAGAAGAGATCGAGGCCGAGAGGGCGACCCGCGCCAAGACGGAGAAGCAGCGCAGCGACTACGCCCGGGAGCTGGAGGAGCTGAGCGAGCGACTGGAGGAGGCAGGGGGCGTCACGTCCACCCAGATCGAGCTGAACAAGAAGCGGGAGGCCGAGTTCCTGAAGCTGCGCAGGGACCTGGAGGAGGCCACCCTGCAACACGAGGCCATGGTGGCCGCTCTTCGCAAGAAGCATGCGGACAGCGTGGCAGAGCTGGGGGAGCAGATCGACAACCTGCAGAGGGTTAAGCAGAAGCTGGAGAAGGAGAAGAGCGAGTTCAAGCTGGAACTCGACGACCTGGGCAGCAACGTGGAGAGCGTGTCCAAGTCTAAG

VastDB Features

Vast-tools module Information

Secondary ID

ENSBTAG00000011803-'33-29,'33-27,34-29=AN

Average complexity

A_S

Mappability confidence:

100%=100=100%

Protein Impact

ORF disruption upon sequence exclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=0.000 C2=0.315

Domain overlap (PFAM):

C1:

PF0157614=Myosin_tail_1=PD(25.6=69.4),PF0003816=Filament=FE(17.6=100),PF0157614=Myosin_tail_1=PU(1.6=28.6)

A:

PF0003816=Filament=FE(10.8=100),PF0157614=Myosin_tail_1=FE(6.0=100),PF131661=AAA_13=PU(5.5=35.5)

C2:

PF0003816=Filament=FE(46.6=100),PF0157614=Myosin_tail_1=FE(25.8=100),PF131661=AAA_13=FE(64.2=100),PF104734=CENP-F_leu_zip=PU(41.1=44.6),PF045827=Reo_sigmaC=PU(29.9=33.1)

Main Inclusion Isoform:

ENSBTAP00000001120