RnoINT0096482 @ rn6
Intron Retention
Gene
ENSRNOG00000046276 | Myh3
Description
myosin heavy chain 3 [Source:RGD Symbol;Acc:3138]
Coordinates
chr10:53637097-53638309:+
Coord C1 exon
chr10:53637097-53637187
Coord A exon
chr10:53637188-53637919
Coord C2 exon
chr10:53637920-53638309
Length
732 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
CATCTGGCTGCTCTCTATAGGCC
3' ss Score
7.94
Exon sequences
Seq C1 exon
GAAGGACTTTGAATATAGCCAGCTGCAGAGCAAGGTGGAAGATGAGCAGACGCTGAGCCTCCAACTTCAGAAGAAAATCAAAGAGTTACAG
Seq A exon
GTAGGAGGGGGCGATCAACTCTCGCTTGCCGGTGTGGGTCACTCAGAAACCTGAGCGGTGTCTGCTAAAGTCAGAGTAGGTACGGTAGGACCGAGACTGCCTCATGGGACCTCACTCTGACAGGCTGACATAGCAGTGGTGGCCGTGATGACCACGTCCCCCAAACTTGCAACAGGATACATGGAGGTGGATGGAGAAATGTCCAGGGTAGTTAGTGACCATATGGGGGCAGGAAAAGATTCATTTGGAAGAAAATCAGCAGCATTTGTTTGTTTGGGGGAACATCCACGAGCAGATTCATCTGGTGGGGACATAACCTCTCCTCCATCGTCATCGTCGTCATCGTTGTCGTCGTCACCATCATCACCACCATCATCATCATCATCATCATCATCATCATCATCATCAAATTTTATATATTAACGGGCTTCCATGTGCTGGTTCATCATGTGCTTATACTATTCACTGATCCAGCCCCCTCTTAATCACTTCCCCCACCTTCCTCACCTTTAGCAAACACCGTTTCATATTCAGATTGACCTAAACAAAATTTTCAGGTGAAAACATGCACCGATTGTTTTTCCGGTGTCTAGCGTCCTCCATTTTGCTGCAAATGGTAGGGCTTCTTTTTATAGACGGGTCATACATTCGTGGGTCGATGACCTCTACTCAGACGCCATGTTAGCTGTTGTGACTCTGAGAGTCTCTTGGGCATCTGGCTGCTCTCTATAG
Seq C2 exon
GCCCGCATTGAGGAGCTGGAGGAAGAGATAGAGGCGGAGAGGGCCACCCGGGCCAAGACAGAGAAGCAGCGCAGCGACTACGCCCGCGAGCTGGAGGAGCTGAGTGAACGTCTGGAGGAGGCGGGCGGTGTCACCTCTACCCAGATTGAGCTGAACAAGAAGCGTGAGGCTGAGTTCTTGAAGCTGCGCAGGGACCTGGAGGAGGCCACCCTGCAGCACGAGGCCACCGTGGCCACGCTGCGGAAGAAGCACGCGGACAGCGCGGCGGAGCTGGCAGAGCAGATCGACAACCTGCAGCGCGTCAAGCAGAAGCTGGAGAAGGAGAAGAGCGAGTTCAAGCTGGAGATCGACGACCTCTCCAGCAGTGTGGAGAGTGTGTCCAAATCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046276:ENSRNOT00000004147:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.415
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(3.5=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(15.0=100),PF104734=CENP-F_leu_zip=PU(42.0=46.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAAGGTGGAAGATGAGCAG
R:
GTTGTCGATCTGCTCTGCCAG
Band lengths:
354-1086
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]