GgaINT0127434 @ galGal3
Intron Retention
Description
NA
Coordinates
chr18:596106-596568:-
Coord C1 exon
chr18:596403-596568
Coord A exon
chr18:596231-596402
Coord C2 exon
chr18:596106-596230
Length
172 bp
Sequences
Splice sites
5' ss Seq
AGCGTAAGT
5' ss Score
10.07
3' ss Seq
TTTTTCACTCTTCCCTGCAGAGG
3' ss Score
11.21
Exon sequences
Seq C1 exon
ATCCTGGCAGAGTGGAAGCAGAAGTATGAGGAAACGCAGGCTGAGCTGGAGGCCTCCCAGAAGGAGTCTCGCTCCCTCAGCACAGAGCTGTTTAAGATGAAGAATGCCTATGAGGAGTCCCTGGACCACCTGGAAACGCTGAAGCGTGAGAACAAGAACTTGCAGC
Seq A exon
GTAAGTCGCTCAGTCTTTCCTGCTGGCAGGGCTTTCTCAGAAGCTTTCCGGCCCACCTCTCCACCTGGGTCTGTGCCTTCAGTGATGGGAGGAGACTTGTTATGCTGTTGTCACAGGGCCTTTCCCTGTATGCTCTGTATCTGACCATGCGATTTTTCACTCTTCCCTGCAG
Seq C2 exon
AGGAGATTTCTGACCTCACAGAGCAGATTGCAGAGGGAGGAAAGGCGATTCATGAGTTGGAGAAAGTCAAGAAGCAGATTGAGCAGGAGAAGTCTGAAATCCAGGCAGCACTGGAGGAAGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023705:ENSGALT00000001424:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.482 A=NA C2=0.381
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(6.4=100),PF0003816=Filament=FE(18.5=100),PF045827=Reo_sigmaC=FE(38.7=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.8=100),PF0003816=Filament=FE(13.8=100),PF045827=Reo_sigmaC=PD(23.9=81.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTATGAGGAAACGCAGGCTG
R:
GTGCTGCCTGGATTTCAGACT
Band lengths:
255-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]