BtaINT0097455 @ bosTau6

Intron Retention

Gene

ENSBTAG00000011803 | MYHC-EMBRYONIC

Description

myosin-3 [Source:RefSeq peptide;Acc:NP_001095305]

Coordinates

chr19:30233989-30234541:-

Coord C1 exon

chr19:30234376-30234541

Coord A exon

chr19:30234114-30234375

Coord C2 exon

chr19:30233989-30234113

Length

262 bp

Sequences

Splice sites

5' ss Seq

AGCGTAAGC

5' ss Score

6.06

3' ss Seq

TCAAACTTCTCTCTTTGCAGAGG

3' ss Score

10.13

Exon sequences

Seq C1 exon

GTGCTCGCTGAGTGGAAAACCAAGTGTGAGGAGAGCCAGGCGGAGCTGGAGGCATCTCTGAAGGAGTCCCGCTCCTTGAGCACCGAGCTCTTCAAACTGAAAAATGCCTATGAAGAAGCCTTAGATCAACTTGAAACTGTGAAACGAGAAAATAAGAATTTGGAGC

Seq A exon

GTAAGCAGTTTGTCTAAAGTCCCCCTTCACACTATCGCCAGAGTGTGAGGCTGCAGGAGTGTGACTTCAGGACCCAACCTCATCTGCGTGTCTGTTACCACACCCAAGGGCTTGTTTCTGAGCTTCTCTGTGTCCAGTATCTTATCTCCAGCAAGCAGCATCCTTAGAGCTTGATAAACTAGTTAAGAGCATCCGGCTAGTGCTTACTCTGCGTGGAAACCTGTGCGAAAGTTCAAGAGCAATCAAACTTCTCTCTTTGCAG

Seq C2 exon

AGGAGATAGCAGATCTCACGGAGCAAATCGCTGAAAGTGGTAAAACCATCCATGAACTGGAGAAATCAAGGAAACAGATTGAGCTGGAAAAGGCTGATATCCAGCTGGCTCTGGAGGAAGCAGAG

VastDB Features

Vast-tools module Information

Secondary ID

ENSBTAG00000011803:ENSBTAT00000001120:34

Average complexity

IR

Mappability confidence:

NA

Protein Impact

ORF disruption upon sequence inclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.054 A=NA C2=0.155

Domain overlap (PFAM):

C1:

PF0157614=Myosin_tail_1=FE(11.0=100),PF0003816=Filament=FE(19.6=100),PF131661=AAA_13=FE(30.4=100),PF045827=Reo_sigmaC=FE(35.9=100),PF152721=BBP1_C=FE(37.4=100)

A:

NA

C2:

PF0157614=Myosin_tail_1=FE(8.2=100),PF0003816=Filament=FE(14.6=100),PF131661=AAA_13=FE(22.7=100),PF045827=Reo_sigmaC=PD(24.8=90.5),PF152721=BBP1_C=FE(27.9=100)

Main Inclusion Isoform:

NA

Main Skipping Isoform:

ENSBTAP00000001120