RnoINT0096489 @ rn6
Intron Retention
Gene
ENSRNOG00000046276 | Myh3
Description
myosin heavy chain 3 [Source:RGD Symbol;Acc:3138]
Coordinates
chr10:53641072-53641644:+
Coord C1 exon
chr10:53641072-53641237
Coord A exon
chr10:53641238-53641519
Coord C2 exon
chr10:53641520-53641644
Length
282 bp
Sequences
Splice sites
5' ss Seq
AACGTAAGC
5' ss Score
7.35
3' ss Seq
GCAAACTTACTTCATTGCAGAAG
3' ss Score
4.91
Exon sequences
Seq C1 exon
GTGTTAGCCGAGTGGAAGACGAAGTGTGAGGAGAGCCAAGCAGAGCTGGAGGCGGCTCTCAAGGAATCCCGGTCCTTGAGCACTGAGCTCTTCAAACTGAAAAACGCCTATGAAGAAGCCTTGGATCAACTCGAAACTGTGAAGCGAGAGAATAAGAACTTAGAAC
Seq A exon
GTAAGCCATTCCGAACCGCCTGAGGTCGTGGGAAACCCAGAGTGTGCGAGGGCGGGTGAGGCTCCGTTATTCAGGCTCCTCCACACCGCTCGGCTGATGCACCGGTAGAAGCCGCTCACCGTTGACAAGCAGTTGTTCTGGGTCTCTATACAATATCTTATCTCTGAGAAGCAGAGGGTTTTAGAGTCCCAGAGAGCTATTGAAAGGCATTTAGTGGGTGCTTCGCATTCCCGGAGCCTGTGTGGCGGCGTCCAAACGCAGTGCAAACTTACTTCATTGCAG
Seq C2 exon
AAGAGATAGCAGATCTCACCGAACAAATTGCTGAGAACGGTAAAAGCATCCACGAGCTAGAGAAATCCAGAAAGCAGATGGAGCTGGAGAAGGCTGATATCCAGATGGCGCTGGAGGAAGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046276:ENSRNOT00000004147:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=NA C2=0.571
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(6.4=100),PF045827=Reo_sigmaC=FE(37.2=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.8=100),PF045827=Reo_sigmaC=PD(22.3=78.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTTAGCCGAGTGGAAGACG
R:
CTTCCTCCAGCGCCATCTG
Band lengths:
286-568
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]