GgaINT0127456 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BSC3]
Coordinates
chr18:8222484-8223371:-
Coord C1 exon
chr18:8223186-8223371
Coord A exon
chr18:8222617-8223185
Coord C2 exon
chr18:8222484-8222616
Length
569 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGC
5' ss Score
9.55
3' ss Seq
TTTGTTTGTTTTCTGTCTAGATT
3' ss Score
8.57
Exon sequences
Seq C1 exon
ATTCACTTCTGTTTCATGCTCAGCTCCTTGTTAAAGCAGCCTCACATTACCAGTTTTGTGGGATTTTTCCTTCACGTCGTCTTTGGCTCACTGGGCTTCATGACGTTCTTTGAAGAAGTGCCACCATCTTTGGAATGGGTCTTTAACCTCTTCAGTCCTTACACTTTTACAGCTGGCATCTCAAAG
Seq A exon
GTATGCTCAAAACAAAGCCATTGCATAGGGATGTTCAGCCTGCAGCACACACAGCTTCTGCCATCTGGCGTTGCATCTGCTATATGTGATGTGCATCTCTGTAGTGATGCAGTTGTGCCCCTACACTCTAAATGCTTTGCAGGAAGAAAATGTGACTCCAAAAAAGTAGATGTTAGCTATTGGTCAGAACCTCAGCAGGGATTTTACTAGCTGTACACACCATAAGTTTCCATCTCTGGAAAGCTGTTGCAGCAGTGAATGTGGCTTGTGGGCATCCAGAGCTGCAGAGCAGCAATGTGTTCAGCTGCCTCCCCAGCCAACACCACAGGCATTGCACTGCTGCTGAGGGGAACTCTGCAAGAGTCCAAGTTCACTCTACTGAGACCCTTCTGATGCTTCTGGTCTTTAAGTGATAGAAACAGTGCCACCATCACAAATGGGTGGGCTTCCTGGGAAGAGAAGGCCGTGGGACACAGCTGTAGCTTGCGTGCCATATCTCTGGCTAAAGGAAAGGTTGCATCTGAATTGTGCTGTTTTTTGTTGTTGTTGTTTGTTTGTTTTCTGTCTAG
Seq C2 exon
ATTGTAAAATTAGAAAAATATGGACCGACTGTCGCAGCAGAGTTGTACCCTTTCTTTAACCTATATGGCATGCTGATCCTGGACAGCATTCTGTATTTGCTGCTGGCCATCTACTTTGATAAGGTTTTGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021395:ENSGALT00000034529:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCACTTCTGTTTCATGCTCAGCT
R:
ACCTTATCAAAGTAGATGGCCAGC
Band lengths:
310-879
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]