GgaINT0127788 @ galGal3
Intron Retention
Description
NA
Coordinates
chr18:445856-446350:-
Coord C1 exon
chr18:446214-446350
Coord A exon
chr18:446112-446213
Coord C2 exon
chr18:445856-446111
Length
102 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
3' ss Seq
ACGTTTCAATTATGCTTCAGGGA
3' ss Score
7.63
Exon sequences
Seq C1 exon
GTGTTCTTCAAAGCTGGGCTGCTGGGACTCCTGGAGGAGATGAGAGATGAGAAGCTGGCACAGCTCATCACTCGCACACAGGCCAGGTGCAGAGGCTTCCTGATGAGAGTGGAGTACCAGAGAATGGTGGAGAGGAG
Seq A exon
GTAGGTGTTCCCCATCTTCAGTTAAAGACACTGTATTTTGGGGGAAATGCTGAGGATCATATCACACAAAATAATCAAATGTACGTTTCAATTATGCTTCAG
Seq C2 exon
GGAATCCATCTTCTGCATCCAGTACAACGTTCGTTCATTCATGAATGTCAAGCACTGGCCCTGGATGAAGCTGTTCTTCAAGATCAAGCCCCTGCTGAAGAGCGCAGAGTCTGAGAAGGAGATGGCCAACATGAAGGAAGAATTTGAGAAGACCAAGGAAGAGCTTGCAAAGTCTGAGGCAAAGAGGAAGGAGCTGGAGGAGAAAATGGTGTCCCTGCTGCAGGAGAAAAATGACTTGCAGCTCCAAGTGCAGGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023832:ENSGALT00000039878:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.198
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(0.4=6.5),PF0061222=IQ=WD(100=43.5)
A:
NA
C2:
PF0157614=Myosin_tail_1=PU(27.4=62.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGAGGCTTCCTGATGAGA
R:
AGCTCCTTCCTCTTTGCCTCA
Band lengths:
245-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]