HsaINT0107432 @ hg19
Intron Retention
Gene
ENSG00000109061 | MYH1
Description
myosin, heavy chain 1, skeletal muscle, adult [Source:HGNC Symbol;Acc:7567]
Coordinates
chr17:10408127-10408616:-
Coord C1 exon
chr17:10408480-10408616
Coord A exon
chr17:10408383-10408479
Coord C2 exon
chr17:10408127-10408382
Length
97 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTA
5' ss Score
7.04
3' ss Seq
CATTTCTGTTCCTATGACAGAGA
3' ss Score
6.71
Exon sequences
Seq C1 exon
GTCTTTTTCAAAGCTGGTCTTCTGGGGCTCCTAGAGGAGATGCGAGATGAGAAGCTGGCCCAGCTGATTACCCGAACCCAGGCCATGTGCAGAGGGTTCTTGGCAAGAGTGGAGTACCAGAAAATGGTGGAAAGAAG
Seq A exon
GTATTAATAAGAATTCTTTACTTAACCTCATCATCTTAGGTGTTTTAATTCTGCTTCTTATTATAATCTGATTTGGACATTTCTGTTCCTATGACAG
Seq C2 exon
AGAGTCCATCTTCTGCATCCAGTACAATGTCCGTGCCTTCATGAATGTGAAGCACTGGCCCTGGATGAAGCTGTATTTCAAGATCAAACCCCTCCTCAAAAGTGCAGAGACAGAGAAGGAGATGGCCAACATGAAGGAAGAATTTGAGAAAACCAAAGAAGAGCTGGCTAAGACCGAGGCAAAAAGGAAAGAGCTGGAAGAAAAAATGGTTACTCTGATGCAAGAAAAAAATGACTTGCAACTCCAGGTTCAAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000109061-MYH1:NM_005963:21
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.256
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(0.4=6.5),PF0061222=IQ=WD(100=43.5)
A:
NA
C2:
PF0157614=Myosin_tail_1=PU(28.3=62.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTTCTGGGGCTCCTAGAGG
R:
GGGCCAGTGCTTCACATTCAT
Band lengths:
182-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)