MmuINT0103187 @ mm9
Intron Retention
Gene
ENSMUSG00000056328 | Myh1
Description
myosin, heavy polypeptide 1, skeletal muscle, adult [Source:MGI Symbol;Acc:MGI:1339711]
Coordinates
chr11:67024605-67025086:+
Coord C1 exon
chr11:67024605-67024741
Coord A exon
chr11:67024742-67024830
Coord C2 exon
chr11:67024831-67025086
Length
89 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGA
5' ss Score
9.11
3' ss Seq
CATTTCTGTTCTTATCACAGAGA
3' ss Score
7.49
Exon sequences
Seq C1 exon
GTCTTTTTCAAAGCTGGTCTTCTGGGGCTCCTAGAGGAGATGAGAGATGACAAGTTGGCCCAGCTTATAACCCGGACCCAGGCTATGTGCAGAGGGTACTTGGCGAGAGTGGAGTACCAGAAGATGGTGGAGAGAAG
Seq A exon
GTATGAATAAGGCAACATTCTTTGTTCTAGTCCCTTTATTCCTGATTCCTGTTAGAACCCAACTTTGAACATTTCTGTTCTTATCACAG
Seq C2 exon
AGAGTCCATCTTCTGCATCCAGTACAACGTCCGCGCCTTCATGAATGTGAAACACTGGCCCTGGATGAAGCTGTATTTCAAGATCAAACCTCTCTTGAAGAGCGCAGAGACCGAGAAGGAGATGGCCAACATGAAGGAAGAATTTGAAAAAGCTAAAGAAAACCTTGCAAAGGCGGAGGCCAAAAGAAAAGAGCTGGAAGAAAAGATGGTAGCTCTGATGCAAGAGAAAAATGACCTGCAGCTCCAAGTTCAGTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056328-Myh1:NM_030679:21
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.090
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(0.4=6.5),PF0061222=IQ=WD(100=43.5)
A:
NA
C2:
PF0157614=Myosin_tail_1=PU(27.4=62.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGGTACTTGGCGAGAGTG
R:
GCCATCTCCTTCTCGGTCTCT
Band lengths:
173-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: