GgaINT0127791 @ galGal3
Intron Retention
Description
NA
Coordinates
chr18:443299-443706:-
Coord C1 exon
chr18:443530-443706
Coord A exon
chr18:443445-443529
Coord C2 exon
chr18:443299-443444
Length
85 bp
Sequences
Splice sites
5' ss Seq
GATGTAAGA
5' ss Score
5.46
3' ss Seq
AATGATCTCCTTTGGTTTAGCTG
3' ss Score
6.67
Exon sequences
Seq C1 exon
GTGAAAAACCTCACAGAGGAGATGGCAGCCTTGGACGAGAACATTGCCAAGCTGACAAAAGAGAAGAAAGCCCTCCAAGAGGCCCATCAGCAGACACTGGATGACCTGCAGGCTGAAGAGGACAAAGTCAATACGCTGACCAAAGCTAAAACCAAGCTGGAGCAGCAAGTAGACGAT
Seq A exon
GTAAGAACAAAAGCATACGGCTATTACAGGACAGTTGTGGAGATAAACATGGCTGGCAGAGCACTAATGATCTCCTTTGGTTTAG
Seq C2 exon
CTGGAAGGGTCTCTGGAGCAAGAGAAGAAGCTGCGCATGGACCTCGAGAGAGCTAAGAGGAAACTTGAAGGAGACCTGAAGTTGGCTCATGATAGCATAATGGACTTGGAAAATGATAAACAGCAGCTGGATGAGAAACTGAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023832:ENSGALT00000039878:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.915 A=NA C2=0.714
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(29.4=100),PF0157614=Myosin_tail_1=FE(43.9=100),PF0003816=Filament=PU(6.3=30.5)
A:
NA
C2:
PF0157614=Myosin_tail_1=PD(0.5=2.0),PF0157614=Myosin_tail_1=PD(24.2=65.3),PF0003816=Filament=FE(16.9=100),PF0157614=Myosin_tail_1=PU(1.6=28.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTGGACGAGAACATTGCCA
R:
TCTTGCTCCAGAGACCCTTCC
Band lengths:
172-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]