BtaINT0097067 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018204 | MYH1
Description
Bos taurus myosin, heavy chain 1, skeletal muscle, adult (MYH1), mRNA. [Source:RefSeq mRNA;Acc:NM_174117]
Coordinates
chr19:30120573-30120973:-
Coord C1 exon
chr19:30120797-30120973
Coord A exon
chr19:30120719-30120796
Coord C2 exon
chr19:30120573-30120718
Length
78 bp
Sequences
Splice sites
5' ss Seq
GATGTAAGT
5' ss Score
9.11
3' ss Seq
TCAACATTATTTACATTCAGCTT
3' ss Score
5.02
Exon sequences
Seq C1 exon
GTGAAAAACCTCACAGAAGAGATGGCAGGTCTGGATGAAACCATTGCCAAGCTGACCAAGGAAAAGAAGGCCCTCCAGGAGGCCCACCAGCAGACCCTGGATGACCTACAGGCAGAAGAGGACAAAGTCAACACTCTGACCAAAGCTAAGACTAAGCTAGAGCAGCAAGTGGATGAT
Seq A exon
GTAAGTCTAGGACTGTCAAGGAAATTTTCTTTGAAAGTAAGCTAAGCAATTCTTTGACTCAACATTATTTACATTCAG
Seq C2 exon
CTTGAGGGGTCCTTGGAGCAAGAAAAGAAACTTCGCATGGACCTAGAGAGAGCCAAGAGGAAACTGGAGGGTGATCTAAAACTGGCCCAAGAATCCACAATGGATATAGAAAATGATAAGCAGCAACTGGATGAGAAACTCAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018204:ENSBTAT00000009327:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.949 A=NA C2=0.918
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(29.4=100),PF0157614=Myosin_tail_1=FE(42.0=100),PF087025=Fib_alpha=PU(14.7=28.8)
A:
NA
C2:
PF0157614=Myosin_tail_1=PD(0.5=2.0),PF0157614=Myosin_tail_1=PD(24.6=69.4),PF087025=Fib_alpha=FE(41.4=100),PF0157614=Myosin_tail_1=PU(1.6=28.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGGAAAAGAAGGCCCTCC
R:
TGGCTCTCTCTAGGTCCATGC
Band lengths:
177-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development