MmuINT0103190 @ mm9
Intron Retention
Gene
ENSMUSG00000056328 | Myh1
Description
myosin, heavy polypeptide 1, skeletal muscle, adult [Source:MGI Symbol;Acc:MGI:1339711]
Coordinates
chr11:67027065-67028153:+
Coord C1 exon
chr11:67027065-67027241
Coord A exon
chr11:67027242-67028007
Coord C2 exon
chr11:67028008-67028153
Length
766 bp
Sequences
Splice sites
5' ss Seq
GATGTGAGT
5' ss Score
7.77
3' ss Seq
CACGAATTGTTAACTTTTAGCTT
3' ss Score
5.31
Exon sequences
Seq C1 exon
GTGAAAAACCTGACAGAGGAGATGGCAGGCCTGGATGAAACCATCGCCAAGCTGACCAAGGAGAAGAAGGCCCTCCAGGAGGCCCACCAGCAGACCCTGGATGACCTGCAGGCAGAGGAGGACAAAGTCAACACCCTGACCAAAGCCAAAATCAAGCTGGAACAGCAAGTGGATGAT
Seq A exon
GTGAGTCTAACACAGAAACATTTTTTAAAGTTTTATAATTAAACAAGCATGCGCTTGTCTCCCCATGACATAATGGGCGTTGCCAAAGCACATCCCCCACACAAGAACTTTAGGATGTAACTGCGGACATGAAGACCAAGATGAATACACAAGAAAATCAGCAAGACAAGTGCTGGATAACAGATATCAGTTAAAAAGAATGAAAGGCAATGAGGGCTTGTTCACCAAGATTTGTATGAACAAACTAGTCTTTAGTTCCCTAGAAACACTGGTGGCTTCAAGAGCCCAAGGGTGACGTCACATGTTCCGTGCAGGAAGCATAGCCACATGTCAACAGGCCTCGTGCTCAGAGGGACACGGGAACACTGGGCAAGGATATGGAAGATCAGCTGGCCATATACATGATAGGATATCTAAGAGAGAACCTGTTGGACACGTGTGAATACTGGTTGTATTAACCAAGGTCACGGTGTGAAAGCATCCCTTTTCTGTCCACCACAAGTGGGAAATATTGCCCATAAGAGACTCAGTGGGCGGTATAGAAGCCGTGATGCCCCAGCGGTAGTCATGGCACAGACCAGTACATTTCACATTTTAAACACTGACTCTGTACAAAGGGATGAGTGATGAGGCAGGTCTTTCTAATTCACTAATTCATAACCTGCCCCATCCCCGCCCCAGAGCATGCTGATACACTATGTCACCAACTCAGCCTGGGACAAAAGTGCTAGTCTTGGGACTGCATTCACGAATTGTTAACTTTTAG
Seq C2 exon
CTTGAAGGCTCTCTGGAACAAGAAAAGAAAATCCGGATGGATCTTGAAAGAGCCAAGAGGAAACTGGAGGGAGACCTGAAACTGGCCCAAGAGTCCACAATGGACGTAGAAAACGATAAACAGCAGCTTGATGAGAAACTCAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056328-Myh1:NM_030679:24
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.678 A=NA C2=0.857
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(29.4=100),PF0157614=Myosin_tail_1=FE(42.3=100),PF0003816=Filament=PU(6.3=30.5)
A:
NA
C2:
PF0157614=Myosin_tail_1=PD(0.5=2.0),PF0157614=Myosin_tail_1=PD(26.3=73.5),PF0003816=Filament=FE(16.9=100),PF0157614=Myosin_tail_1=PU(1.6=28.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAAAACCTGACAGAGGAGATGG
R:
TGAGTTTCTCATCAAGCTGCTGT
Band lengths:
318-1084
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: