MmuINT0103190 @ mm10
Intron Retention
Gene
ENSMUSG00000056328 | Myh1
Description
myosin, heavy polypeptide 1, skeletal muscle, adult [Source:MGI Symbol;Acc:MGI:1339711]
Coordinates
chr11:67213563-67214651:+
Coord C1 exon
chr11:67213563-67213739
Coord A exon
chr11:67213740-67214505
Coord C2 exon
chr11:67214506-67214651
Length
766 bp
Sequences
Splice sites
5' ss Seq
GATGTGAGT
5' ss Score
7.77
3' ss Seq
CACGAATTGTTAACTTTTAGCTT
3' ss Score
5.31
Exon sequences
Seq C1 exon
GTGAAAAACCTGACAGAGGAGATGGCAGGCCTGGATGAAACCATCGCCAAGCTGACCAAGGAGAAGAAGGCCCTCCAGGAGGCCCACCAGCAGACCCTGGATGACCTGCAGGCAGAGGAGGACAAAGTCAACACCCTGACCAAAGCCAAAATCAAGCTGGAACAGCAAGTGGATGAT
Seq A exon
GTGAGTCTAACACAGAAACATTTTTTAAAGTTTTATAATTAAACAAGCATGCGCTTGTCTCCCCATGACATAATGGGCGTTGCCAAAGCACATCCCCCACACAAGAACTTTAGGATGTAACTGCGGACATGAAGACCAAGATGAATACACAAGAAAATCAGCAAGACAAGTGCTGGATAACAGATATCAGTTAAAAAGAATGAAAGGCAATGAGGGCTTGTTCACCAAGATTTGTATGAACAAACTAGTCTTTAGTTCCCTAGAAACACTGGTGGCTTCAAGAGCCCAAGGGTGACGTCACATGTTCCGTGCAGGAAGCATAGCCACATGTCAACAGGCCTCGTGCTCAGAGGGACACGGGAACACTGGGCAAGGATATGGAAGATCAGCTGGCCATATACATGATAGGATATCTAAGAGAGAACCTGTTGGACACGTGTGAATACTGGTTGTATTAACCAAGGTCACGGTGTGAAAGCATCCCTTTTCTGTCCACCACAAGTGGGAAATATTGCCCATAAGAGACTCAGTGGGCGGTATAGAAGCCGTGATGCCCCAGCGGTAGTCATGGCACAGACCAGTACATTTCACATTTTAAACACTGACTCTGTACAAAGGGATGAGTGATGAGGCAGGTCTTTCTAATTCACTAATTCATAACCTGCCCCATCCCCGCCCCAGAGCATGCTGATACACTATGTCACCAACTCAGCCTGGGACAAAAGTGCTAGTCTTGGGACTGCATTCACGAATTGTTAACTTTTAG
Seq C2 exon
CTTGAAGGCTCTCTGGAACAAGAAAAGAAAATCCGGATGGATCTTGAAAGAGCCAAGAGGAAACTGGAGGGAGACCTGAAACTGGCCCAAGAGTCCACAATGGACGTAGAAAACGATAAACAGCAGCTTGATGAGAAACTCAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056328:ENSMUST00000124516:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.678 A=NA C2=0.857
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(29.4=100),PF0157614=Myosin_tail_1=FE(42.3=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=PD(0.5=2.0),PF0157614=Myosin_tail_1=PD(26.3=73.5),PF0157614=Myosin_tail_1=PU(1.6=28.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAAAACCTGACAGAGGAGATGG
R:
TGAGTTTCTCATCAAGCTGCTGT
Band lengths:
318-1084
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types