GgaINT0128386 @ galGal3
Intron Retention
Gene
ENSGALG00000023800 | Q90900_CHICK
Description
NA
Coordinates
chr18:485863-486290:-
Coord C1 exon
chr18:486107-486290
Coord A exon
chr18:486029-486106
Coord C2 exon
chr18:485863-486028
Length
78 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTC
5' ss Score
6.8
3' ss Seq
CACGCTCTGTTGCTCCTCAGATC
3' ss Score
10.45
Exon sequences
Seq C1 exon
GAAGAAGCTGGCACAGCGCCTGCAGGATGCCGAGGAACATGTTGAAGCTGTGAATGCCAAATGTGCTTCCCTGGAAAAGACAAAGCAGAGGCTGCAGAATGAGGTGGAGGACCTGATGATTGACGTGGAGCGAGCAAATGCTGCCTGCGCAGCTCTGGACAAGAAGCAGAAGAACTTTGACAAG
Seq A exon
GTATTCTGGGCTCCAGCCCTGTGTTTCCTGAGCAGAACGTGATTGCCACATCCATACTCACGCTCTGTTGCTCCTCAG
Seq C2 exon
ATCCTGGCAGAGTGGAAGCAGAAGTACGAGGAAACGCAGGCTGAGCTGGAGGCCTCCCAGAAGGAGTCTCGCTCCCTCAGCACAGAGCTGTTTAAGATGAAGAATGCCTATGAGGAATCCCTGGACCACCTGGAAACGCTGAAGCGTGAGAACAAGAACTTGCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023800:ENSGALT00000001427:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.258 A=NA C2=0.482
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(7.1=100),PF0003816=Filament=FE(20.5=100),PF045827=Reo_sigmaC=PU(34.3=75.8)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(6.4=100),PF0003816=Filament=FE(18.5=100),PF045827=Reo_sigmaC=FE(40.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGAGGAACATGTTGAAGCT
R:
CTTCTGCTTCCACTCTGCCAG
Band lengths:
180-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]