MmuINT0103436 @ mm9

Intron Retention

Gene

ENSMUSG00000033196 | Myh2

Description

myosin, heavy polypeptide 2, skeletal muscle, adult [Source:MGI Symbol;Acc:MGI:1339710]

Coordinates

chr11:67005905-67006334:+

Coord C1 exon

chr11:67005905-67006088

Coord A exon

chr11:67006089-67006168

Coord C2 exon

chr11:67006169-67006334

Length

80 bp

Sequences

Splice sites

5' ss Seq

AAGGTGATT

5' ss Score

5.88

3' ss Seq

CACTGCTCTTGTTTTCTCAGATC

3' ss Score

9.96

Exon sequences

Seq C1 exon

GAAGAAGCTGGCTCAGCGTCTGCAGGCGGCTGAGGAGCACGTAGAAGCCGTGAACGCCAAGTGCGCTTCTCTGGAGAAGACGAAGCAGCGGCTGCAGAACGAGGTGGAGGACCTCATGCTGGATGTGGAGAGGACCAACGCTGCTTGTGCCGCCCTGGACAAGAAGCAGAGAAACTTCGACAAG

Seq A exon

GTGATTCCCGACGCATCCTCTCTCTGCTTGGCACACCCTTTTCCATCACCCACAGCAGCTCACTGCTCTTGTTTTCTCAG

Seq C2 exon

ATCCTGGCAGAGTGGAAGCAGAAGTATGAGGAAACCCACGCTGAGCTCGAGGCATCCCAGAAGGAGGCCCGCTCCCTGGGCACTGAGCTCTTCAAGATGAAGAATGCCTACGAGGAGTCTCTGGATCAGCTAGAAACCCTGAAGCGAGAGAATAAGAACTTACAGC

VastDB Features

Vast-tools module Information

Secondary ID

ENSMUSG00000033196-Myh2:NM_001039545:31

Average complexity

IR-S

Mappability confidence:

NA

Protein Impact

ORF disruption upon sequence inclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.194 A=NA C2=0.366

Domain overlap (PFAM):

C1:

PF135141=AAA_27=FE(8.3=100),PF0157614=Myosin_tail_1=FE(11.9=100),PF0003816=Filament=FE(21.6=100),PF045827=Reo_sigmaC=PU(37.9=93.5),PF060097=Laminin_II=PU(28.7=46.8)

A:

NA

C2:

PF135141=AAA_27=FE(7.5=100),PF0157614=Myosin_tail_1=FE(10.7=100),PF0003816=Filament=FE(19.4=100),PF045827=Reo_sigmaC=FE(35.9=100),PF060097=Laminin_II=FE(54.5=100)

Main Inclusion Isoform:

NA

Main Skipping Isoform:

ENSMUSP00000018641