HsaINT0107705 @ hg38
Intron Retention
Gene
ENSG00000125414 | MYH2
Description
myosin heavy chain 2 [Source:HGNC Symbol;Acc:HGNC:7572]
Coordinates
chr17:10525451-10525876:-
Coord C1 exon
chr17:10525693-10525876
Coord A exon
chr17:10525617-10525692
Coord C2 exon
chr17:10525451-10525616
Length
76 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATT
5' ss Score
8.83
3' ss Seq
AACAGGTCTTGGTTTTTCAGATC
3' ss Score
7.94
Exon sequences
Seq C1 exon
GAAGAAGCTGGCCCAGCGGCTGCAGGCAGCTGAGGAACATGTAGAAGCTGTGAACGCCAAATGTGCTTCCCTCGAAAAGACGAAGCAGCGGCTGCAGAATGAGGTCGAGGACCTCATGCTTGATGTGGAGAGGACAAATGCCGCCTGTGCCGCCCTTGACAAAAAGCAAAGGAACTTCGATAAG
Seq A exon
GTAATTCCTCCAGCATCTTCTGCTCTTTACTCTACTCTTTTGTCTTTGCAGCAGGTAACAGGTCTTGGTTTTTCAG
Seq C2 exon
ATCCTGGCAGAATGGAAACAGAAATGTGAGGAAACGCATGCTGAGCTTGAGGCCTCCCAGAAGGAGGCCCGTTCCCTTGGCACTGAGCTGTTCAAGATAAAGAATGCCTATGAGGAATCTTTGGATCAGCTAGAAACCCTGAAGCGAGAGAACAAAAACTTACAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000125414:ENST00000245503:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.145 A=NA C2=0.179
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(7.1=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(6.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAACGCCAAATGTGCTTCC
R:
CTCAGCATGCGTTTCCTCACA
Band lengths:
180-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development