RnoINT0096286 @ rn6
Intron Retention
Gene
ENSRNOG00000049695 | Myh1
Description
myosin heavy chain 1 [Source:RGD Symbol;Acc:735061]
Coordinates
chr10:53732918-53733347:+
Coord C1 exon
chr10:53732918-53733101
Coord A exon
chr10:53733102-53733181
Coord C2 exon
chr10:53733182-53733347
Length
80 bp
Sequences
Splice sites
5' ss Seq
AAGGTGATT
5' ss Score
5.88
3' ss Seq
CACTGCTCTTGGTTTCCCAGATC
3' ss Score
8.63
Exon sequences
Seq C1 exon
GAAAAAGCTGGCTCAGCGTCTGCAGGCGGCTGAGGAGCACGTAGAAGCCGTGAACGCCAAGTGTGCTTCCCTGGAGAAGACTAAGCAGCGGTTGCAGAACGAGGTGGAGGACCTCATGCTGGACGTAGAGAGGACCAACGCTGCCTGTGCTGCCCTGGACAAGAAGCAGAGAAACTTCGACAAG
Seq A exon
GTGATTCCCGAAGCATCATCTCTCTGTTCGGCTCACCTTTCTCTGGCATCCACAGAAGCTCACTGCTCTTGGTTTCCCAG
Seq C2 exon
ATCCTGGCAGAGTGGAAGCAGAAGTATGAGGAAACACATGCTGAGCTGGAGGCATCCCAGAAGGAAGCCCGCTCCCTGGGTACTGAGCTCTTCAAGATGAAGAACGCCTACGAGGAGTCCCTGGATCAGCTGGAAACCCTGAAGCGAGAGAATAAGAACTTACAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049695:ENSRNOT00000004236:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.210 A=NA C2=0.339
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(7.1=100),PF045827=Reo_sigmaC=PU(40.0=96.8)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(6.4=100),PF045827=Reo_sigmaC=FE(36.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACGTAGAGAGGACCAACG
R:
ACTCCTCGTAGGCGTTCTTCA
Band lengths:
183-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]