BtaINT0097276 @ bosTau6
Intron Retention
Gene
ENSBTAG00000007090 | MYH2
Description
Bos taurus myosin, heavy chain 2, skeletal muscle, adult (MYH2), mRNA. [Source:RefSeq mRNA;Acc:NM_001166227]
Coordinates
chr19:30142815-30143245:-
Coord C1 exon
chr19:30143062-30143245
Coord A exon
chr19:30142981-30143061
Coord C2 exon
chr19:30142815-30142980
Length
81 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACT
5' ss Score
9.01
3' ss Seq
TCTTTTGGTGTGTGTTTCAGATC
3' ss Score
12
Exon sequences
Seq C1 exon
GAAGAAACTGGCCCAGCGTCTGCAGGCTGCTGAGGAACACGTGGAAGCTGTGAACGCCAAATGCGCCTCCCTTGAGAAGACCAAGCAGAGGCTCCAGAATGAGGTTGAGGACCTCATGCTCGATGTGGAGAGGACAAACGCTGCCTGCGCAGCCCTGGACAAAAAGCAAAGGAACTTTGACAAG
Seq A exon
GTAACTTCTGCACAGCCTCCGGCCTCCACCACTGTTCTCTGTCCTTTCCAGCCACGTAACCTCTTTTGGTGTGTGTTTCAG
Seq C2 exon
ATCCTGGCAGAATGGAAACAGAAGTATGAGGAAACCCACGCCGAGCTCGAGGCAGCTCAGAAGGAGGCCCGCTCTCTGGGTACCGAGCTGTTCAAGATGAAGAATGCCTACGAGGAGTCCTTGGATCAGCTAGAAACTTTGAAACGAGAGAACAAAAACTTGCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007090:ENSBTAT00000012797:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.194 A=NA C2=0.375
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(7.1=100),PF0003816=Filament=FE(20.6=100),PF045827=Reo_sigmaC=PU(39.2=93.5),PF060097=Laminin_II=PU(29.4=48.4)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(6.4=100),PF0003816=Filament=FE(18.6=100),PF045827=Reo_sigmaC=FE(37.2=100),PF060097=Laminin_II=FE(53.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTCATGCTCGATGTGGAGA
R:
TTGAACAGCTCGGTACCCAGA
Band lengths:
169-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]