GgaINT0128806 @ galGal3
Intron Retention
Description
NA
Coordinates
chr18:4558608-4560335:+
Coord C1 exon
chr18:4558608-4558707
Coord A exon
chr18:4558708-4559025
Coord C2 exon
chr18:4559026-4560335
Length
318 bp
Sequences
Splice sites
5' ss Seq
CAGCTAAGA
5' ss Score
2.49
3' ss Seq
GAAAGAAGTGCATGAGGACATTC
3' ss Score
-32.67
Exon sequences
Seq C1 exon
GAAAATGATGTATCCAAGCACTACATGGAGCTGGCAGCAGAAAACAGACAGCAGCTCAGCCGGCTGGAGTTTGCCAAGAAGATTGTTGAGAAGGTACCAG
Seq A exon
CTAAGAGCTTGTGGATGGTTGGGGTACGCTGGATCGCGGTTGGAAACAGTCCTTCTGCAGCTGTAACAAGGCAGCACCAAGCAACCTTGTGCACTGCAGCACCTCCCTGACAGGTGGAAACTCTTTGAGATGTAGCTGCTTGAAATGGTGCTAATGTGTCCTCATCTGCCACTTACAAGTGGCCTCCTTTAGGTGCTCCCAGGGGTTATCTACCATTCTGTCTCCTGCCCTGCTCTGTGCTAGGTTCGGAGTGACTTGCTTTCCCAGCTTTTTTATTTTCGTTTGTTGTCTCCTCGCAGAAAGAAGTGCATGAGGACA
Seq C2 exon
TTCAAAGCGTGCATGAGCAGACCCAGCAATCTGCAAACAAAGCCGTGCCGAGCAGGGAATCTGAAGGGCTGAAACTGCAGCTGGAGGAGGAGAGGAGGAACGTGGCCAGGATTGAAGAGGACCTGGAGGAGCACAGGAACAAGCTGCTCATGCTGAAGACTCAGAGGCCCATTGAAAGAGTGGAAGAAAAGGAGGTGGTGGAATATTACAGAGACCCACAGCTGGAGAGCAGCCTGACCAAGATGACGCAGCAGATCGAAGAGGAAGGCAAAAAGAGGCAGAGCCTGCAAGAAGACATCGAAGTGATGAGCAGGAAGCTTGCCCAGATGGAGAGCGAGAAGAAGGCTGTTCCTGCCCAGCTCCTCACCAAAGAGATAACAAAAATTGAGAAGGATCCCAACCTGGATAGCCAGGCAGCCAGCCTTCGGCAGGAGATCAGGCGTCTCCAGGAGGAAAGCTTGGCTGCTGCTTCCGAACTGGAGCAGTGTAAGAGAGAGCTGCACGTGCTAGAGAGAAAGCAGCCCAACATCCGAGAGAAAGTGGTGGTGAAGGAGCTGATCAAAACAGAGAAAAACCCAGAGATGCTGAAGTCCGTGAGGAACCTGCAGCTGCAGATTGATGAGGAGTCCTTCAAGAGGAAGTCTGCAGAGGAAGCGATCGTGAAGGTGAAGAGCAAGATTGAGGAGGTGGAAAAACTAATTGATGCTGCAGAACCCAAAATTATTGTGAAGGAGGTGAAGCAGGTAGAGCAGGATCCGGAGTTACTGAAAGAGTCTTCCAAGCTTAAAGCTCTGATTGAAGAAGAGAGGAGCAAGAACTTGGCGCTCGCGGGTGAGCTGGGAGAGCTGCAAAGCCAGTGCAGCATTGCAGAGAAGCAAAAACCAAGGGTGGAAGTGAAAGAGAGGGTCAATGAGATTTTCATGGTGGATCCTGAAACGGAGAAGGAAATTGCTCACCTGAAAAGAGAGCTGCAGGAAGTTACTCTGAAAAGGACAAAGATCGACAGCGAGGTGGAAGAGGCCTTGGCAGAGCTCAGTGTCCTCAGGTCACAGAAACCAGAGGTGGAGCTTAAAGAGGTTATAGAGGAGGTGGTGAAGCATGAGAAGAGTCCTGAAATTCTTAGAGAAATCGACAGGCTGAAACAGCAGCTGAATGAATTGGTGAACACCAACGGCAGGACCCAAGAGCAGCTCATCAGGCTGCAGGGTGAGAGGGATGAATGGAAGAGGGAGAGATCCAAGGTGGAAATGAAGCTGGTCAACAAGGAAGTCATCCGGTATGAGAATGATCCACTCTTGGAAAAGGAAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002108:ENSGALT00000003290:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.324 A=NA C2=0.268
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGCACTACATGGAGCTGG
R:
CTTCCTCTTCGATCTGCTGCG
Band lengths:
354-672
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]