MmuINT0059578 @ mm10
Intron Retention
Gene
ENSMUSG00000034282 | Evpl
Description
envoplakin [Source:MGI Symbol;Acc:MGI:107507]
Coordinates
chr11:116220559-116225160:-
Coord C1 exon
chr11:116225068-116225160
Coord A exon
chr11:116224202-116225067
Coord C2 exon
chr11:116220559-116224201
Length
866 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
TCTTTCCCGGTCACCTACAGAAG
3' ss Score
6.9
Exon sequences
Seq C1 exon
GAGAAGAACCTTGCGAAGGCTTACACTGAGGTTGCCGCAGCTGAGCAGCAGCAGCTGCGCCAGCTGGAGTTTGCTAAAAAGATGCTCAGGAAG
Seq A exon
GTAAAAAGATGGCGCCCACCCTGGGACGACAGCAGACAGCCCGGTCCGGGGTGGTGCCCACCCTGGGACGACAGTGGACAGCCTGGTCCGGGGTGGACCCGGATGTCACCTTTCTCCCCTGCAGCCTTAGCCTCTGGACAGGCCTGGGCATGGAGATTTCTCTAGAAGTTCATGCAGGCTGTGCCTACTCCAGGCAGGCTCTGGGGGTGCCCTCCAGTCTTCCCTTAGCCATAAGCAGTCCTCCAGTGGGGACAAGAGAGCTTTAGAGAGCCAAGAAATGCTCCATAGTCCTCAGCCTTAAGACCAGTTACGTTGAGCCAGGCAGTGGTGGCGCACACCTTTAATCCCAGCCCTCGGGAGGAAGAGGCAGGCAGATTTCTGAGTTCAAGGCCAACCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCTTGTCTCGAAAAACCAAGGGGGAAAAAAAAAAAAAAAAGACCAGTCACATAGGAAATAGGCCATCTAGGGCTCCGTTGTGGGTTGAGCAGAAGCCAGGAACTCTGGTGCCTGTGGCTGGCCAGGTTTTCTTATCCTGAGCCATTTTTTCAGTGTCTACTGGAGAAGGTTAGCAGCCCCTCCCCCAGGGGGCGGGGCTGGGGGACCCAGACCCTGCTTTGTATCCTAATAGCATCTCAGTGAGCTCCTCCGAATCCTCTGTTCAAGTCTTCCAAATCTTCAGTTCCGTTGCCCAGGATCTACCGGGAAGTCCAAGACAGCAGGCTGGGATCTCTGACCTCAGGGGTGGGGTGCAGAAAAATAGGGCTCCAGTCTTTTCTCTGCTCACCCCAGGACTGTCTCTCTCTTTCCCGGTCACCTACAG
Seq C2 exon
AAGGAACTTGATGAGGACATCCAAGCCATCCACAGCGCGAGACAGGGATCTGGGAGTCCGGCACACGCAAGGACGGCGGAGTCAGAGGTCCTGAAGACCCAGCTTGAGGAAGAGAGGAAGCGGGTGGCTGAGGTGCAGCGTGACCTGGAGGAGCAGAGGCAGCGGCTGCTGCAGCTGAGGACCCAGCAGCCTGTGGCGCGGCTGGAGGAGAAGGAAGTGGTGGAATTCTACCGGGACCCCCAGCTGGAGAGTAACCTGTCTCAGGCAGCATCCCGGGTGGAGGAAGAGGGCAAGAGGCGGGCCCGCCTGCAGGCCGAGCTGGAGGCGGTGGCCCAGAAGGTTGTCCACTTGGAGGGCAAGAGGAAGACCATGCAACCTCACCTGCTGACCAAAGAGGTCACCCAAATCGAGAGGGACCCTGGCCTGGACAGCCAGGTTACCCAGCTCCACAGTGAGATGCAACGGTTGCGCGGGGAGAACGGCGTCCTCACAGCCAGGCTGGAAGAGCTGAAGGACGAGCTGCTAGCCCTGGAGCAGAAGGAGATGAACGTGAAGGAGAAGGTCGTGGTGAAGGAGGTGGTGAAGGTGGAGAAGGATCTAGAAATGGTTAAGGCGGCCCAGACTCTGAGGCTCCAGATCGAGGAAGATGCTGCACGGAGGAAGGGGGCGAAGGAGACCGTTGCCAAGATACAGGCTCGCATCAAAGACCTGGAGCAGGCGATCAGCTCAGTGGAGCCCAAGGTCATTGTGAAGGAGGTGAAGAAGGTAGAGCAGGACCCGGGCCTTCTCAAGGAGGCTTCCAGGCTGAGAAGCCTCCTGGAGGAGGAGAAGAACAACAACGTCGCGTTGGCCAGGGAACTGCAGGAGCTGCAGGAGAAATACAGGGTGGTGGAAAAGCAGAAGCCCAAGGTGCAGCTGCAGGAGCGAGTCAGCGAGATCTTCCAGGTGCTCCCGGAGACAGAGCAGGAGATCCGGAGGCTCCGGGCCCAGCTGCAGGAGACAGGCAGCAAGAAGAGCGGCGTGGAGCAGGAGGTAGAGAAGCTGCTGCCTGAGCTGGAGGTCCTGCGGGCTCAGAAGCCCGTGGTGGAATATAAGGAGGTGACTCAGGAGGTGGTGAGGCACGAGAAGAACCCAGAGGTGCTGCGGGAGATCGACCGTCTCAAGGCTCAGCTCAACGAACTGGTCAACACCAACGGGCGCTCTCAGGAGCAGCTCATCCGGCTCCAGGGCGAACGCGATGAGTGGAAGCGGGAAAGGTCCAAGGTGGAGACCAAGATGGTGAGCAAAGAAGTCGTGCGGCACGAGAAGGATCCGGTGCTGGAGAAGGAGGCCGAGAGGCTCCGGCAGGAGGTGCGGGAGGCTGTCCAGAGGAGGCGAGCCACGGAGGATGCTGTGTACGAGCTGCAGAACAAGTTACTGCTGCTGGAGAGGAGGCGGCCCGAGGAGCAGATAGTGGTGCAGGAGGTGGTGGTCACCCAGAAGGACCCGAAGCTGCGCGAGGAGCACAGCCGGCTGAGCCGCAGCTTGGATGAGGAGGTGGGGCGCCGGCGGCAGCTGGAGCTGGAGGTGCGGCAGCTGGGCGCCAGAGTTGAGGAGGAGGAGGCCAGGCTCAGCTTCGAGGAGGATCGCAGCAAGAAGCTGGCCGCCGAGAGGGAGCTGCGGCAACTGACCCTGAAGATCCAGGAGCTGGAGAAGCGGCCCCCTGCCCTGCAGGAAAAGATCATCATGGAGGAAGTGGTCAAGTTAGAGAAAGATCCTGACCTGGAGAGGTCTACAGAAGCTCTGCGGCGCGAGCTGGATCAGGAGAAGAACCGCGTGACCGAGCTGCACCGGGAGTGCCAGGGTCTGCAGGTTCAGGTCGACCTCCTCCAGAAAACTAAATCACAGGAGAAGACCATATACAAGGAAGTGATCAGGGTCGAGAAGGACCCGGTGCTGGAGGGCGAGAGGGCCCGAGTGTGGGAGATCCTTAACCGGGAGCGCGCAGCCCGCAAGGGCCGGGAGGAGGATGTCCGGAGCTTGCAGGAGCGGATCGACCGAGCCGAGGCTCTGAGGAGGTCCTGGTCCCGCGAGGAAGCTGAGCTCCAGAGGGCCCGGGACCAGGCAAGCCAGGACTGCGGGCGGCTGCAGAGACAGCTGCGGGAGCTGGAGCAGCAGAAACAGCAGAAAGCCCGGCAGCTACAGGAGGAGGGGAGGCTGCTTAGCCAGAAGACGGAGAGCGAGCGCCAGAAGGCCGCCCAGCGGAGCCAGGCGGTCACGCAGCTCGAGGCTGCCATTCTCCAGGAAAAGGACAAGATCTACGAGAAAGAGAGGACCCTCAGGGACCTGCACACCAAGGTGAGCCGGGAGGAGCTCAACCAGGAGACCCAGACCCGGGAGACCAACCTCTCCACCAAGATCTGCATCTTGGAACCGGAGACCGGCAATGACATGTCTCCTTACGAGGCCTACAAGAGGGGTGTCATCGACAGAGGCCAGTATCTCCAGCTGCAGGAGCTGGAGTGTGACTGGGAAGAAGTCACAACCTCCAGCCCCTGCGGGGAGGAGTCTGTGCTCCTGGACCGCAAGAGCGGGAAGCAATACTCCATCGAGGCCGCCCTCCGCTGCCGCCGCATTTCCAAAGAAGAGTACCACAGGTACAAAGATGGCCGCCTCCCCATCTCCGAGTTTGCCCTGCTTGTGGCAGGGGAGACCAAGCCGAGTTCTTCACTCTCCATTGGGTCCATCATCTCCAAGTCTCCAGTCTGCTCCCCAGGCCCCCAGAGTACCGGCTTCTTCTCCCCAGGCCTCTCTTTTGGGCTCACTGAGGATAGCTTCCCCATCGCGGGGATCTACGATACAACCACAGACAACAAGTGTAGCATCAAGGCAGCTGTGGCCAAGAACATGCTGGATCCTATCACTGGGCAGAAGCTGTTGGAGGCCCAGGCAGCCACGGGAGGCATTGTTGACCTTCTTAGCCGAGAACGGTACTCCGTACACAAGGCGGTGGAGCGGGGACTCATTGAGAACACCTCCACTCAACGGCTGCTCAATGCTCAGAAGGCCTTCACCGGCATCGAGGACCCTGTCACCAGGAAGAGGCTGTCGGTGGGTGAGGCCATCCAGAAGGGCTGGATGCCCCAGGAAAGCGTGCTTCCCCACCTGCTGGTACAGCACCTGACTGGGGGCCTCATCGACCCCAAGAGGACGGGACGCATCCCCGTCCCTCAGGCTGTGCTCTGCGGGATGATCAGCGAAGACCTGGGCCAGCTCCTGCAAGATGAATCCGGCTACGAGAAGGATCTGACAGACCCCATCACCAAGGAGAGGCTGAGCTACAAGGAGGCCATGGGGCGCTGCCGCAAAGATCCTCTAAGTGGCCTACTACTGCTCCCCGCCATGCTAGAAGGCTATCGCTGCTACCGCGCGGCCTCCCCCACCCTGCCAAGATCCTGTGTGCGTTGATGAGGGGCTCTGCAGAGGGGGAGGGAGAATGCACACGTCACCTTGCCCTGGAGCTGCGTAATCCGAGGCAGCGGGTCCTCCTCCTGAGTGTCCACCTCACTGCGCAATCGTTTGTGGTGTTGGGCTCTGTCCCCAAATATGGGAAGTTCCGTTGTTCCTCCCCACCCCGTGCTTCTAATAAATGGATTATCTCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034282:ENSMUST00000037007:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=NA C2=0.199
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0068115=Plectin=WD(100=3.7),PF0068115=Plectin=WD(100=3.1),PF0068115=Plectin=WD(100=3.9),PF0068115=Plectin=WD(100=3.4),PF0068115=Plectin=WD(100=3.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCGAAGGCTTACACTGAGG
R:
ACAGGTTACTCTCCAGCTGGG
Band lengths:
342-1208
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types