GgaINT1012597 @ galGal4
Intron Retention
Gene
ENSGALG00000002108 | EVPL
Description
envoplakin [Source:HGNC Symbol;Acc:HGNC:3503]
Coordinates
chr18:4542682-4546873:+
Coord C1 exon
chr18:4542682-4542774
Coord A exon
chr18:4542775-4543080
Coord C2 exon
chr18:4543081-4546873
Length
306 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCA
5' ss Score
7.87
3' ss Seq
CGTTTGTTGTCTCCTCGCAGAAA
3' ss Score
10.86
Exon sequences
Seq C1 exon
GAAAATGATGTATCCAAGCACTACATGGAGCTGGCAGCAGAAAACAGACAGCAGCTCAGCCGGCTGGAGTTTGCCAAGAAGATTGTTGAGAAG
Seq A exon
GTACCAGCTAAGAGCTTGTGGATGGTTGGGGTACGCTGGATCGCGGTTGGAAACAGTCCTTCTGCAGCTGTAACAAGGCAGCACCAAGCAACCTTGTGCACTGCAGCACCTCCCTGACAGGTGGAAACTCTTTGAGATGTAGCTGCTTGAAATGGTGCTAATGTGTCCTCATCTGCCACTTACAAGTGGCCTCCTTTAGGTGCTCCCAGGGGTTATCTACCATTCTGTCTCCTGCCCTGCTCTGTGCTAGGTTCGGAGTGACTTGCTTTCCCAGCTTTTTTATTTTCGTTTGTTGTCTCCTCGCAG
Seq C2 exon
AAAGAAGTGCATGAGGACATTCAAAGCGTGCATGAGCAGACCCAGCAATCTGCAAACAAAGCCGTGCCGAGCAGGGAATCTGAAGGGCTGAAACTGCAGCTGGAGGAGGAGAGGAGGAACGTGGCCAGGATTGAAGAGGACCTGGAGGAGCACAGGAACAAGCTGCTCATGCTGAAGACTCAGAGGCCCATTGAAAGAGTGGAAGAAAAGGAGGTGGTGGAATATTACAGAGACCCACAGCTGGAGAGCAGCCTGACCAAGATGACGCAGCAGATCGAAGAGGAAGGCAAAAAGAGGCAGAGCCTGCAAGAAGACATCGAAGTGATGAGCAGGAAGCTTGCCCAGATGGAGAGCGAGAAGAAGGCTGTTCCTGCCCAGCTCCTCACCAAAGAGATAACAAAAATTGAGAAGGATCCCAACCTGGATAGCCAGGCAGCCAGCCTTCGGCAGGAGATCAGGCGTCTCCAGGAGGAAAGCTTGGCTGCTGCTTCCGAACTGGAGCAGTGTAAGAGAGAGCTGCACGTGCTAGAGAGAAAGCAGCCCAACATCCGAGAGAAAGTGGTGGTGAAGGAGCTGATCAAAACAGAGAAAAACCCAGAGATGCTGAAGTCCGTGAGGAACCTGCAGCTGCAGATTGATGAGGAGTCCTTCAAGAGGAAGTCTGCAGAGGAAGCGATCGTGAAGGTGAAGAGCAAGATTGAGGAGGTGGAAAAACTAATTGATGCTGCAGAACCCAAAATTATTGTGAAGGAGGTGAAGCAGGTAGAGCAGGATCCGGAGTTACTGAAAGAGTCTTCCAAGCTTAAAGCTCTGATTGAAGAAGAGAGGAGCAAGAACTTGGCGCTCGCGGGTGAGCTGGGAGAGCTGCAAAGCCAGTGCAGCATTGCAGAGAAGCAAAAACCAAGGGTGGAAGTGAAAGAGAGGGTCAATGAGATTTTCATGGTGGATCCTGAAACGGAGAAGGAAATTGCTCACCTGAAAAGAGAGCTGCAGGAAGTTACTCTGAAAAGGACAAAGATCGACAGCGAGGTGGAAGAGGCCTTGGCAGAGCTCAGTGTCCTCAGGTCACAGAAACCAGAGGTGGAGCTTAAAGAGGTTATAGAGGAGGTGGTGAAGCATGAGAAGAGTCCTGAAATTCTTAGAGAAATCGACAGGCTGAAACAGCAGCTGAATGAATTGGTGAACACCAACGGCAGGACCCAAGAGCAGCTCATCAGGCTGCAGGGTGAGAGGGATGAATGGAAGAGGGAGAGATCCAAGGTGGAAATGAAGCTGGTCAACAAGGAAGTCATCCGGTATGAGAATGATCCACTCTTGGAAAAGGAAGCTGACCGCCTCCGTCAAGAAGTGCGCAGCATGTCTCAGAAGAGGAGAGCTGCAGAGGATGCTATCTATGACCTGCAGAATAAATACATGCTCCTGGAGAGGAGAAAGCCAGAGGAAAAGGTCATCGTCCAAGAGGTGATTCTGACTCAAAAGGATCCCAAGCTCCGAGACGAACACAACAGGCTGAGCCGGAGCCTGGATGAGGAGGTGAGCAACAGGCGGCGTCTGGAACGCGACGTGCAACAGCTTCGTGCGCTGGTGGAAGAGCAAGAGAAGCTCCTCAACTTCCAGGAGGATCGAAGTAAGAGGCTTGCACTGGAGAAAGAGATGAGGCAAATTACCTTGAGAATAAAGGAGCTGGAGGAGAGCCCGGCCCCAGTGCAAGAGAAGATCATTATGGAAGAAGTGGTGAAGTTGGAGAAGGATCCGCTCCTTGAGCAGTCTGCCAGCAACCTGCGCTTGGAGCTGGACCGGGAGAAGATGGAGGTGCTGAACTTGCAGAGAGAGTGCAAGAACCTGCAGATGCAAGTTGACGTCCTGCAGAAAGCCAAGTCCCAGGAGAAGACCATCTACAAGGAGGTGATTCGGGTGGAAAAGGACAGAGCGCTGGAGAGCGAACGTGCCCGCATCTGGGAACAGCTGAGCAGAGAGAGAGGGGCCAAGCAAAAGGCAGAAGAGGAGGTTCGGAGGCTCAGGGAGAAGATCGAGAGAGCTGAAGGCATGAAGAGGACGTGGGCTCGGGAAGAGACGGAGCTGCAGAAAGCCAGGAACCTGGCGATCCAGGAGAGAGCCAGCCTGGAGAGTGAGCTGCGGGAGCTGGAGAGGCAGAAACAGCAGAAAGTTCTTTTCCTTCGGGAGGAGTCCAAACTGCTCAACCAGCGGACCGAGAGCGACCGGCAGAAGAAGAAGCAGCTGGAACAGGAGTTTTCCATGCTGGAGGCAGATATCCTGAGGGAGAAGGACCAGATCTACAATAAGGAGAGGTTCATTCGGGATCTCCGGTCAAGAGTCAGCAGGGAGGAAATTAATCACGAGACCCAGATGAGAGAGACCAACCTCTCCACCAAGATCTCTATACTGGACCCTGAGACGGGGAAGGATATGTCCCCTTATGAGGCCTATAAGAGAGGCATCATAGACAGAGGCCAGTATATCCAGCTGCAAGAGCTGGAGTGTGACTGGGAGGAGATCACCACCCTGGGCCCGAATGGGGAAATCTCAGTTCTCCTGGATAAGAAAAGTGGGAAGCAGTACTCCATTGATGATGCACTACGGCTGAGAAGGATCACAAAGGAGGAGTACCAGCTGTACCGGGATGGCAAGATTCCCATCTCTGAATTCGCCTTGCTGGTGGCTGGGGAATCTAAGCCTCCCCCATCCCTTTCTATTGGTTCCATCATCTCCAAATCCCCAGTCCAATCCCCCACTACCCTGCAAACCCAAAGCTTTTTCCCCCCAGGCTTGCAGAAGGGCTTTGGTGACGACGCATCCCCCATCGCCGGGGTGTACGATACCACCACTGACACCAAGTACAACATCAGGACTGCTGTTACTAAGAAGCTGCTTGATCCCATGACAGCTCAGAAGCTCCTGGAAGCCCAGGCTGCCACGGGAGGCATCATAGACCTCCTTTCTCGGGACCGGTTGTCAGTCCATAAGGCAATTGAGCGGGGACTGATCGACAGGACCTATATGCAGAGACTGCTCAACGCCCAGAAAGCTTTCACAGGGATCGAGGATCCAGTGACCAAGAGAAGGCTGTCCGTGGGGGAAGCAGTTCAGAAGGGATGGATGACCAAGGACAGTGCCTTCCCCTATTTGGAGGTGCAGCATCTAACTGGAGGGCTCATTGACCCCAAGAAAACCGGTCGCATTCCTGTGCTGGAAGCTGCCCAGATGGGCATGATAACGGGTGACCTGGCCAACAGGCTGCAGGATGAGTCCAGCTACGAGAAAGATCTCATTGACCCCATCACTAAGGAGAAGATAAATTACAAGGAGGCCATGGCTCTCTGCCAGAAGGATTCTCTGGGCAGCCTGCTGCTGCTCCCAGCCGCATCAGAGGGCTACCAGCCCTACCGCTCCCCCAAGCTCTCACGGTTCAGGCATTGAAGAACGGGTTGGTCCTTTCAGGAGTTCATCCCTTCAAAGCACCTCTCCCTGCGGAAGCAGCAGCAATCACGGGAATGGAGCATCTAGCATTTAGAGCTGCATACTCTTCTCTCTTAGCTATCCCTGCTTCCCAACACAGCTTGGCCACGCAAGGAAGAAAGCGTGATTGAACACATGCAAGGACCTGGGCATGCAGGTCCTACTGTCCCCCAGGGTTGCTGTGACAGCAGAGGGGGTTTGCTTGCAAGAACTCTGATGGCAGTAGATTAAACATGGCTGTAGCCAGAAAGGGGGAGACGCAGAGTGTTTTTCAAGCTGGATCATTCTTCTGCATGCAATAAACATAGAAAGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002108:ENSGALT00000003290:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.387 A=NA C2=0.169
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0068115=Plectin=WD(100=3.7),PF0068115=Plectin=WD(100=3.1),PF0068115=Plectin=WD(100=3.9),PF0068115=Plectin=WD(100=3.3),PF0068115=Plectin=WD(100=3.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGCACTACATGGAGCTGG
R:
GTCATCTTGGTCAGGCTGCTC
Band lengths:
346-652
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]