RnoINT0057017 @ rn6
Intron Retention
Gene
ENSRNOG00000009343 | Evpl
Description
envoplakin [Source:RGD Symbol;Acc:1306141]
Coordinates
chr10:105100336-105104692:-
Coord C1 exon
chr10:105104600-105104692
Coord A exon
chr10:105103967-105104599
Coord C2 exon
chr10:105100336-105103966
Length
633 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
CTCTTTCCTGGTCACCACAGAAG
3' ss Score
5.99
Exon sequences
Seq C1 exon
GAGAAGAACCTTACTAAAGCTTACACTGAGGTCGCCGCAGCGGAACAGCAGCAGCTGCACCAGCTGGAGTTTGCTAAGAAGATGCTGGAGAAG
Seq A exon
GTAAAATGTCGGTGCCCACTCTGTGGACACAGCAGCCCAGCTGGTCTGGGGTGGGCCTGGATGTCACCTTTCCCCACTGCAGCCTCAGCCTCTGGTCAGACCTGGACATGAAGATTTCTCCAGAAGTTCATACAGGTTGTGCCTACTCTAGGCAGGCTCTGGAGGTGCCCTCCAGTCTTTGCTTAGTCATAAGCAAAGGGGACAAGAGAGGCCTAGAGAGCCAAGAAATACTCCATAATCCTTAACCTTAGGACCCAGTCACATAGGCAATGGACCATCTAGGTCTCCAGTGAGAGTTGAGTGGAAGCCAGGAACTCTTTATGGTGCCTGTGGCTTGCCAGTTTCTCTCTTTCTGAGCCATTTTTCACTATCTACTGGAGAAGATTAGCCCCACCCCCGGGGCAGAGCTGGGGAGTTCCAGACCCTGCCTTGTATCCTAACAGCAATTCACTGAGGTCTTCGAAATCCTGTGTCCAAGTATCACGAGTCTTCAGCTCCATCGCCCAGGACCTACCAGGGAATCTAAGAAAGCGAGGAGGAGGAGGTCTCTGACCTCAGGGGTAGGGCGCAGAAAAATGGGGCTCCAGTTTTTGCTCACCTCAGGACTGTCTCTCTCTTTCCTGGTCACCACAG
Seq C2 exon
AAGGAGCTCAATGAGGACTTCCAAGCCATCCACAGTGCAAGACAAGGATCTGGCAGTCCAGCACATACAAAGACAGAGTCAGAGGTCCTGAAGACCCAGCTCGAGGAAGAGAGGAAACGCGTGGCTGAGGTGCAGCGTGAACTGGAGGAGCGGAGGCAGCAGCTGCTGCAGCTGAGGACCCAGCAGCCTGTGGCTCGGCTGGAGGAGAAGGAAGTGGTAGAGTTCTACCGGGACCCCCAGCTAAAGAGTAACGTGCTTCAGGCATCGTCCCGGCTGGAGGAAGAAGGCAAGAGGCGAGCCCGCCTACAAGCCGAGCTGGAGGTGGTGGCCCAAAAGGTTGTCCACTTGGAGGGCAAGAGGAAGGCCATGCAGCCTCACCTGCTGACCAAAGAGGTCACCCAAATTGAGAGGGACCCCGGCCTGGACAGCCAGGTTACCCAGCTCCACAATGAGATGCAGGGGCTGCGTGGGGAGAACGCCGTCCTCGCAGCCAGGCTGGAGGGGCTGAAGGATGAGTTGCTGACCCTGGAGCAGAAGGAGATAAATGTGAAGGAGAAGGTGGTGGTGAAGGAGGTAGTTAAGGTGGAGAAGGATCTGGAAATGGTGAAGGCGGCCCAGACGCTAAGGCTGCAGATCGAGGAAGATGCTGCACGGAGGAAGGGGGCGAAGGAAGCAGTAGCCAAGACACAGGCTCGCATCAAAGACCTGGAGCAGGCGATCAGCTCCGTGGAGCCCAAGGTCATTGTGAAGGAGGTGAAGAAAGTGGAGCAGGACCCTGGGCTTCTCAAGGAAGCCTCCAGGCTGAGAAGCCTCCTGGAGGAGGAGAAGAACAAGAACGTCATGTTGGCCAGGGAACTGCAGGAACTGCAGGACAAGTACAGGGCGGTAGAGAAGCAGAAGCCTAAGGTGCAGCTGCAGGAGCGCGTCAGCGAGATCTTCCAGGTGCACCCGGAGACAGAGCAGGAGATCCTGAGGCTCCGGGCCCAGCTGCAGGAGACAGGCAGCAAGAAGAGCTGTGTGGAGCGGGAGGTGGAGAAGCTGCTGCCTGAGCTGGAGGTCCTGCGGGCTCAGAAGCCCGTGGTGGAATATAAGGAGGTGACGCAGGAGGTGGTGAGGCACGAGAAGAACCCAGAGGTGCTCCGGGAGATCGACCGCCTCAAGGCTCAGCTCAATGAACTGGTCAACACCCACGGGCGCTGTCAAGAGCAGCTCATCCGGCTCCAGGGCGAACGCGATGAGTGGAAGCGTGAGCGGTCCAAGGTGGAGACCAAGATGGTGAACAAAGAGGTGGTGAGGCATGAGAAGGATCCAGTGCTGGAGAAAGAGGCCGAGAGGCTCCGGCAGGAGGTGCGGGAGGCCGTCCAGAAGAGGCGAGCCGCCGAGGATGCTGTCTACGAGCTGCAGAACAAGTATCTGCTGCTGGAGAGGAGACGCCCCGAGGAGCAGATCGTAGTGCAGGAGGTGGTGGTCACCCAGAAGGACCCGAAGCTGCACGAGGAGCACAGCCGGCTGAGCCGGAGCTTGGATGAGGAGGTGGGGAGGCGGCGGCAGCTGGAGCTGGAGGTGCGGCAGCTGAGCGCCAGCGTGGAGGAGGAGGAGGCCATGCTCAGCTTCGAGGAGGACCGCAGCAAGAAGCTGGCTGCGGAGAGGGAGCTGCGGCAACTGACCCTGAAGATCCAGGAGCTGGAGAAGCGGCCTCCTGCCCTGCAGGAAAAGATCATCATGGAGGAGGTAGTCAAGTTAGAAAAGGATCCGGATCTGGAGAGGTCCACAGAAGCTCTGAGGCGAGAGCTGGATCAGGAGAAGAACCGGGTGATCGAGCTACACCGGGAGTGCAAGGGCCTGCAGGTTGAGGTCGACCTCCTTCAGAAAACGAAATCACAGGAAAAGACCATATATAAGGAAGTGATCAGGGTGGAGAAGGACCCAGTCCTGGAGAGCGAGAGGGCCCGTGTGTGGGAAACCCTTAACCGGGAGCGAGCAGCACGCCAGAGTCGGGAGGAGGATGTCCGGAGCTTGAAAGAGCGGATCGACCGAGCCGAGGCTCTGAGGAGGTCCTGGTCACTCCAGAAGGCCCGGGACCAGGCAAGCCAGGACTGTGGGCGGCTGCAGAGAGAGCTCCGAGAGCTGGAGCAGCAGAAGCTACAGAAAGCCCAGCAGCTACAAGAGGAGGGGCGGCTGCTTAGCCAGAAGACGGAGAGCGAGCGCCAGAAGGCCGCTCAGCGGAGCCAGGCCCTCTCACAGCTCGAGGCTGCCATTCTCCATGAAAAGGACAAGATATACGAGAAGGAAAGGACCCTCAGGGACCTGCACACCAAAGTGAGCCGGGAGGAGCTCAACCAGGAAACCCAGACACGGGAGACCAACCTTTCCACCAAGATCTGCATCTTGGAACCAGAGACCGGGAATGACATGTCTCCCTACGAGGCCTACAAGAGGGGTATCATCGACAGAGGCCAGTACCTCCAGCTGCAGGAGCTGGAGTGTGACTGGGAAGAAGTTACCACCTCCAGTCCCTGTGGGGAGGAGTCTGTGCTCTTGGACCGCAAGAGCGGGAAGCAATACTCCATTGAGGCCGCCCTCCGCTGCCGCCGCATCTCCAAAGAAGAATATCACAGGTACAAAGATGGCCGCCTCCCCATCTCCGAGTTTGCCCTGCTTGTGGCAGGGGAGACCAAGCCCAGTTCCTCACTCTCCATTGGGTCCATCATCTCCAAGTCCCCAGTCTGCTCCCCAGGACCCCAGAGTACCGGCTTCTTCTCCCCAGGCCTTTCTTTGGGGCTCACTGAGGATAGCTTCCCCATCGCTGGGGTTTATGATACAACCACAGATAACAAGTGTAGCATCAAGGCAGCTGTGGCCAAGAACATGCTGGATCCCATCACTGGGCAGAAGCTGTTGGAGGCCCAGGCAGCCACAGGAGGCATCGTAGATCTTCTCAGCCGAGAACGATACTCCGTACACAAGGCAGTGGAGCAGGGACTCATTGAGAACACCTCCACCCAACGTCTGCTCAACGCTCAGAAGGCCTTCACCGGCATCGAGGACCCAGTCACCAGGAAGAGGCTGTCAGTGGGTGAGGCCATCCAGAAGGGCTGGATGCCCCAGGAAAGCGTGCTTCCCCACCTACTGGTGCAGCACCTTACTGGGGGCCTCATCGATCCCAAGAGGACAGGACGCATCCCCGTCCCTCAGGCTGTGCTCTGCGGGATGATCAGCGAAGACCTAGGTCAGCTCCTGCAAGACGAATCCAGCTACGAGAAGGATTTGACAGACCCCATCACCAAGGAGAGGCTGAGCTACAAGGAGGCCATGGGGCGCTGCCACAAAGATCCTCTAAGTGGCCTGCTACTTCTCCCAGCCATGCTGGAAGGCTACCGCTGCTACCGAGTGGCCTCCCCCACCCTGCCTCGCTCCTGTGTGCGTTGAGGAGGGCTCTGCAGGAGGGAAGTTAGAATGCAGGCGTGCACCGCCTTGTCCTGGAGCAGCATAATCCCAGGCAGCGGTCCTCCTCCTGTCCATCCACCTCACTGTGCAGTCACTTGTGTTGGGCCCTGTCCCCAAACANNNNNTTGGGAAGCTCTGTTATCCCTCCCACCCCCTGCTTCTAATAAATGAATTATCTTGGTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009343:ENSRNOT00000012373:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.129 A=NA C2=0.169
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0068115=Plectin=WD(100=3.7),PF0068115=Plectin=WD(100=3.0),PF0068115=Plectin=WD(100=3.9),PF0068115=Plectin=WD(100=3.4),PF0068115=Plectin=WD(100=3.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACCAGCTGGAGTTTGCTAA
R:
CTCCAGCTCGGCTTGTAGGC
Band lengths:
358-991
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]