DreINT0065102 @ danRer10
Intron Retention
Gene
ENSDARG00000019808 | evpla
Description
envoplakin a [Source:ZFIN;Acc:ZDB-GENE-030829-19]
Coordinates
chr6:17978436-17983451:+
Coord C1 exon
chr6:17978436-17978528
Coord A exon
chr6:17978529-17978641
Coord C2 exon
chr6:17978642-17983451
Length
113 bp
Sequences
Splice sites
5' ss Seq
GAGGTGATA
5' ss Score
3.13
3' ss Seq
TCTTTATTCTATTTGTACAGAAT
3' ss Score
6.95
Exon sequences
Seq C1 exon
GAGAAGGATCTTACTAAACAGTATGCTGAGACCGCTGCTGAAAGTGACCAGTTACTCAAACAAATAAACTTTGCAAAGGGCATTGTGACTGAG
Seq A exon
GTGATACCAGTAACATGAGTGTTCATATCATCCATGTAATCTTTTTTTTTTTTTAAATAAAAAGTAAAAATCAAGTGACTTAATATCAACTGGTCTTTATTCTATTTGTACAG
Seq C2 exon
AATGTGGAACAAGTCAACACCATACAACAACAGCAACAACAGCAGCTGCAACAAAAAGCCTTTGAGGACACTGAAGTTCTCCAGAAAGAGTTAAAGGAGGAAATTGCCAAACGTACTAATGCAGAGAATACACTGGGCACGATTAAAAGCAGATATTTATCTCTGAAGAGCAGAAGAGGAATAGAGCGAGTTGAAGAGAAAGAGATACTGCAGTATTACCGTGACCCAAAACTTCAGGCCAGTGTGGACGACTTTCAAAAAAAGATTCATGAAGAAGCATTGAAGCGCACCAAAACACAGAGTGAGATTGAGGTACTGAACAGAAAGATCACTAGCCTAGAGAGTGAACTTAAGAACACCAAGCCCAAGCTAGTCACAAGAGAAGTGACTGAGGTAGAGAGAGACCCTCAACTAGATGTAGAATCAACAAATATTCATGAAAGCATTAACAAATTGAGTAGGGAGCTTAGAGTTAAAGAACAAGAGAAGGCTCAGCTGCAAACAGAGCTGAAAATGTTAGAGCAAAAGAAGCAAAACATAAAAGAGAAGGTGGTGCAAAAGGAAGTGGTTAGACTTGAAAAAGATCCAGAAATGTTAAAAGCAGTTAGGACATTTGAGTTGGATATCTCAGATGAAGGAGAAAGGTGCAAGTCACTGAAGAGTGAAATCTCTCAAACCAAGAGTAATATAAATTCTCTTGAGAGACTCATCCCAACATTGGAGCCAAAAGTGGTCACGAAAGAGGTAAAAAGAGTGGAGCAGGACCCTGTACTTATAATGGAGTCCAAAGAGCTTCTGAATAAAATAGAAGAAGTGAGAAATGAGAACAAAAGTCTCATGTTTGAGCTTAATAACCTTCAATCACGTCATGTCCAAATACAACAGATGAAGCCGAGAGTGGAGGTCAAAGAAATCATAAATGAGAACTTCAGAGTAGCCCCTGAAACAGAAGCAGAAATGCAGCGCTTGAGAAGAGAGCTTCAAGACAACAGCAGGCAGTGCTCAGACTTTGAGAGACAAATTAGCTTTGTCAAAACAGAACATGAAGCTCTTCGTGCACAGAAACCCAAGGTTGAATACAAGGAAGTAGTCCAGGAAGTTGTAAAAGAGGAACGAAGTCCTGAGAATGTTAGAGAGATACAGAGGCTTTCTGATCAAGTATATTCTCTGCAAAAAGCCTACAACAATTTGCAAAATGATCTTATACGTCTAAGAAAAGATAGGGATGAGTGGAAAGCTGAAAAGTCAAAGGTAGAGACCAAGATTGTCACTAAGGATGTAACAAAGTATGTTGACGACCCACTTCAAGAGAAAGAAGTTGATCGTCTCAGGAGAGACGTCCGTGAAGAAACTCAGAGGCGCAGAACAATAGAGGAAATGGTGTTTGATCTTCAGAACAAATATATTCAGCTGGAGAGACAAAAACCTGAGGAAAAGCTTGTAGTACAAGAGGTAGTGCGTCTACAAAAGGATCCAAGGCAGATCCTTGATCATGACAGGTTAGGAAGGAGTCTAGATGAAGAAGTGAAGAATAGGAGAAAACTAGAACTAGAGGTACAGCAGCTGAGAGCACTCATAGAAGACAAGGAAATAGCAATCAGGAGCAGTGATGAAAAGCAAAAAAAGATTCAGGTGGAAACTGAGCTGAGACAAATTAAATCCAGAATTCATGAGCTAGAAACTGCCCCACCTCCTATTGAAGAGAACATAGTCATAGAGGAAGTTCTAAAAGTTGAGAGGGATCCAAAACTTGATAAACTGACAAATGGTCTTCGCACAGATATGGATAAAGAAAGCAGCGACATTATGCGTCTAGAAAGAGATATCAGGAAATTGGCACTTGATATTGAAATCTTGCAGCGAGAGAAGTCAGTTGAGAAGACCATCTATAAAGAGGTTGTTCGTGTAGAGAAAGATCAAGCACTTGAAGCAGAACGATCCCACCTTAGAGACCAGTTCCTTCAGGAGAAAAATGTCAGACGAGACCTTGAGGATAAACTCCATCGTCTACAAGAGAAACTACAGCAACAAGCAAGCAAAAAAACGGCAATGTCGCTGGAGGAGACCAACCTAGTTCATGATCGGGACAAGCTGCAAAGAGAAAAAGAAAACCTTCAGAGAGAACTGAGATCATTGGAATCTGAAAGACAAAACATCACCATCTCCTTCCAACAGCATTCTAGGCTGATGAGTGAAAGAAACCAAATGAACAGGCAAAGAAGCATTAAAATGGAATCAGATGGTCAGAGGCTGGAAAGGGATATCCTTGATGAAAAAGACAAAATTCACAAACGAGATAACATAATTAGGGAGCTGAAGAACAGTTTACAGAAGGAGGACTCCTCTGAGATGCGCACAAAAGAAGTCAATGTTTCCACAAAGATAAGCATCTTGGACCCCAACACTGGAAAAGATATGTCACCATATGATGCCTATAGGCAAGGCTTCCTCGATCGCAACAAATACTTGCAGTTACAAGAAATGGAGTGTGACTGGGAGGAAATCACTACAATGGCACCTGATGATGAGATATTGGTTTTGCAAGATCGCAAGAGTGGGAAACAGTACTCCATCAAAACTGCACTAAAAGAAGGCAAGGTGACCAAATACCAACTACAACAGTATAAGGATGGCAAAATGTCTATTTCAGAGTTTGCTCTTCTTGTAGCTGGGGAAAAAAAATCATCGTCATACACTCCACACTTCAACAGCCAATTGAATCAACAGCTTAAAGAAGAGTTTCCTATATGTGGTGTATATGATGTACACACAGATTCATGTGTAAATGTGCGCAGTGCCATGAGTCGAAAGTTGATTGACACCAACACTGCCCAAAAGCTTCTTGAAGCACAAGCTGCCACTGGAGGTATTGTGGACATCAGCAATGGAATAAAATATTCGGTACACAAAGCAGCTGATCGAGGTCTGATTGAGTCTAGTCAGCTACAGAGGTTACTAAATGCTCAAAAGGCCTTCACCGGAGTTGAGGATCCTATGACCAAAGAACGTCTGTCGGTCGGAGAGGCTGTACAAAAAGGCTGGATGCCCAAAGAAAATGCCATGAGATACATGGAGGCACAATTTCTGACAGGCGGGTTGGTCAACCCCAACAAAGCAGGAAGAGTTAACATTGTGGATGCAGTCAGCTCTAAGATGATTGACAGTACAATGATGAGAGAGCTTCAGGAAGAGATCAATTATGCAAAAGAGCTGACTGATCCAATCACAAAGGAAAAGATCAACTACAAACAGGCTTTGGCTCGTTGTAAGATAGACCCACTCTCAGGCCTTCCGATGTTTAATGCTTCCTCAAAAAATGTCTAAACTTCCTTATATTTCAGTCATACATAGCCACTCATAGTCTACATTGGTTTACATAATGTATTCATTTAATCCAATTACTTGTTTCTGTACTGTCAACGTAACCATTTCTCCCTGTCATACAAAAACCAAACAAACAAACAAAAAAGCAGTCAAGACCCTCACCTATTGTGTTTTATGGGTGTGTTACAGTTTATTTTAAAAAAATTTTATTATTATTATTATTTTTATTTTTTTTTTTACAATTTTACAATCATTTTGCCACAAATTTCAGAACCCTGGATTCAATTTTCCAAACTCTAGACACAAAATTCACAACCATTGCACTTTGCAAATTGCACTTTTTTTTTTTCAAAATTCTTGGATGAAATAAATTCAAGTCAAATACACTAAAATGACCTTTTCAGTAAATTACAATTAAACATCAAATTGATCCTATTTCAATATGCAACTCAAACATTACATTTGAAATAACTGTGGGTTAATTTAATCACCACAATATAACTATCAACTGACACAAGCACTCTAAATGATAGTGATATAAATATATGCAAATTACAGGTGACATTCTAGTTCATATGGATTTCACATATATGAAACATGTCATGTCAAAATATTGCAAAAATTGCCATTTTTTCAACCATTATATTTACAAATAAGCAAGAAACACTGTTGTTAAGTTTGCTATTCTCCTTTTTTCAGTAAACCTACATTATGTTTGAATGAATAAAACTTTAGTTCAGTGAATCCACTGTCTGTACTATTCCTTCTACACTTACGTGTAAACCATAATGAAACGTGAAATATTTTTTCATGTTATAATGAAACCATATATTTTTCAAAACAATATTTAATGAATGTTAATGATTGTTTATTGAAACGGAAAATTGTGTGTGGGTGATCTAAAGTTTTGTTCCTGTAGTATTTGTATGATAAAAGGATTATGTGAACCAATGAATTTGCAAATGTTTAAAGAAAAGAAAGAAACGCAACATGCAAAGTTTTGAACAGTGGAAAGTCTGTGATAAAAGCAGTGACTGTTTAGAGTTTTGTGTCTAGAGTTTTAAAAATTGACGTCAGGGTTCTGAAATCTGTGCCAAACGATGATTTTGAAAAATAAGTAAATAAAGTGTAATTGTAAACTTAATAAAAAAGGTTTCAAAATTACTTATTACAAGTTAATACATATTTAATAAATGTTTAGAGGTGCACAAAACGAAACCCTTTAAAAGTTGTAAGTTGTCATACTTAATCAGATATATATTGTAAATGTGCAACATAGATCTGATTAAGATCTATAAACAATCTATTTTATATCTCAGGTGCTATAATATTTGTCAATTTGACTGTAGTACTTTGAACTAAGTCTTTTAAGTGTTGAAAAATAATGTTGAGACATTTAACTCATTTGACTATGTAATGGGGCAGAAATTTGTACCACAAAGTAAAACATATTTATCCAAATAAAAAATGTTATTCTGTTTATTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019808:ENSDART00000143263:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.161 A=NA C2=0.221
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0068115=Plectin=WD(100=4.2),PF0068115=Plectin=WD(100=3.2),PF0068115=Plectin=WD(100=4.1),PF0068115=Plectin=WD(100=3.4),PF0068115=Plectin=WD(100=4.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAAGGGCATTGTGACTGAG
R:
TGGGTCACGGTAATACTGCAG
Band lengths:
249-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]