GgaINT0129068 @ galGal4
Intron Retention
Gene
ENSGALG00000007181 | PGS1
Description
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q5ZHN9]
Coordinates
chr18:10099526-10102345:-
Coord C1 exon
chr18:10102197-10102345
Coord A exon
chr18:10099669-10102196
Coord C2 exon
chr18:10099526-10099668
Length
2528 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
GCTGATTTTTCTCTAGACAGGAG
3' ss Score
2.68
Exon sequences
Seq C1 exon
GCCTCTGGCTGTACCTGGCAGGGAGCAGTCTTCCCTGCCTAACCCTGATTGGGTCTCCTAATTTTGGATATCGATCCGTTCACCGTGACTTGGAAGCTCAGGTTGCAATAGTGACAGAAAATAAAGCTTTGCAGCAGCAACTCCACCAG
Seq A exon
GTAAGCGGCTGTTTCTGGGGAGATAACGTGGATGCTGTGCTTCTTGGTCACATAGGGAATGCTGATGACGCAGTTGCAATAAAAACCTACAGCCACAATAATTCAAAACCTTCTTGAGCATAGGAAGTCTCAAGGAGCTGTCAGTTAAGTGACTATTGATGAGATGCCTGCTACGAGTGCCTGTTTCTGGGAAATGGAGGCCGTAATGGGAAAGAACATGTGTCCCCAGTGAACTCGAGTATCGGAGTGCTCAGGCAGTGGATGCTGAGAGAGACAGAGAGGGTTTGCTGGCTCTGCTGCTCATGCAGCACGTTCTCAGGCCTTATCCCCCAATATTTGGGCATTGCTAAGGTAGCAGCACGCTGAGCTGATGAGGTCAGGCCCTAGGAACCTCCCTTCTCACAATTCTGTAGGACTTTGCTTCTCAGGCGTTTGGGAAATCCTTTGCAGGACTATGAGTGCCAAGCAGTTAGCCCTTGGGTGGCTGTCCACGGTCTGTGGAGGTGAATGAGGGCAGCAGATCTTAGTGTAATTTCTACAGTAAGAGCATTTCTGAGCTGGATGGATTGCATCGCCCACGAAATTACACGCAGCAGCTCTTAGTGTTGACACAAGTGTTTTTCAGTGGCTTAATGTTCAGTGTCCTGCCTTCTTCTTTTCTCATTAGGCAGCTTGGACTGTTCAGCACTCTTGCTGCTTCCCCAACCCCTGTCAGTTTTGACTCTGAATCTTCTGTGGGAGCTGACGCTGTCCCCTGTAATTTCTCTTGTAGTGCTCTGAAGTGAGGTTTGCTGCCTCTGTGTGCGACTTAAGGATCTGAAAAATGCCTTGCATTTAGCTGAGTCTTGGCATAAGAAGGCACAGATCAATGGGAATTGCCCTATTGCATCAGGGCTCTTCCACAGAATGAGTCACAGTATATCTAATCAAAAACAATTCTATTACTGGAAGAGTTGCTTGAATATTTCAATTCATATCTTGCCTCTACTTGTTTCTAATGGAAGGAGAGAATCAATGGAAACATGACAGAGGAATTTTCTCAAACAGTGCGGCAGTGATCTAATTTAAAGGGCTCTGAATGATTCCCATTTGCTGGAAGCTGATTCTGAGATTGGCTGGCTGTTTACTGTTCTGTGATCTTTGTTCAGAGGACTTAATTCTATGCCGAGGTGACACAGCCTCTAATGGAGTGCTCTCTCTTTCTGTGCATATTACAACTCCATTCAGCACTCCAGCTGAAATGTCATTTTCAGTTATATGAACAAACGGAATACTCAGTGCCTGTTTTCCTGTTTTTCAGGGCATCAGATGTGTTCCGGGCTTTTCTATTTGACATTTCTTTCTTTGACCCTTTAAACTTTCGGCCTTCTTAGTAATAACCTTCTGAATAATAACTGAGCTTTTAATATTGCAGCTGATGTGCAGCAGCCACCTCTTAGCTTGTACAGTGCCACGAAATCCCTTTGGTTGTGCAACATTCAGTTCCAAATAGCACCAGCATTTTTAAAGCAGGGGGGTTGGAAAGAAGAGGGGCTGTGTGTCTCACTGAACGAGCTGAGCATTTTGGTCAAGTCTCTGAATTTCAATTCAGATAACTGCTCTCACTTCAGTGCTCAGCTTACCTCACTGTATCAGATGACCGTGACACAGAGGCTTCTTGACAGGACTGATGATAGCATTTTGGGTTTCTAAAATTAGTCTGATTCGGCGCACACACTTCTTGTGTCTGTTCCTGGCTCGTGTTTCTGTGCTCCTTTCCAATGCCTGGTTCCTGCTTTCTGCATTGCACTCTGTGTTCTTTCTGTTGTTTGTGACAACTAAACCAGTCAAAAGATAAAGTATAGACTTACAGGAGATGATCTGTTCCTTATTTGCCTGCAAATCTAGAAACATAACTGGTTTTGATAAGAAAGCCGCTTCTACATTGGATCAAAAATCTGCTTTCACGTGTGACGTGGGCACATATTATCATCGTGATGGTTCATTTCCTCTTTCAGCAGTGTTGTGTACACAATGAAGAAGCCTAAGTGTTTCTGGTAATATAGTTGAAAGAAATCATGACTGCATATTCATTTGAAAACACAGTGCTTGAGCTGTGTCTAGAGAGGAGTGCGTAAGCCAGTCTCTTGAGATTATGATAAGGTTTCCTTTTCTGGCAATTACAGCAAGGGATTTAGGATTTTTCTGAAACTACAGCTGTAAGAGAGCTAAGCTTCAAGGCACACAAAGGAAAACCTTCTGCCTTTGCTGTTTGTAGAGTTAAATTGCTAATTTTTGAGGATCGCTTTGTTAGGGCAGCAGTAGGCACCCAGAGGTGGAGTGCAGTAGCAGGGGATTGGAAGGACACGTCCTCTGCTGTCTCCTTGGTGGGTTCATTGCTCTGTGAGCTGTGCTGCATAGAATGAGACTATTACGCTCAGGCTTGTGAGAATCCTGGCAGGATCACGGCCAGTTTTCTGCTTTGTCTTACAGGCTGTTATATGTAATTTAACACTTACAATTTACTGGGCTGATTTTTCTCTAGACAG
Seq C2 exon
GAGCAGGAGCAGCTTTACCTCTGCTCAGGTGTGGTGTCATCATCAACGTTTGAGCAGCCAAGTCGGCATGTGAAGCTGTGGGTGAAATTGGTAACGCCTCTGATCAAGAATTTCTTTTGAAAGAAGCAGAGTTGCAGCTTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007181:ENSGALT00000011630:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF130911=PLDc_2=FE(31.6=100)
A:
NA
C2:
PF130911=PLDc_2=PD(3.2=12.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]