MmuINT0118513 @ mm10
Intron Retention
Gene
ENSMUSG00000017715 | Pgs1
Description
phosphatidylglycerophosphate synthase 1 [Source:MGI Symbol;Acc:MGI:1921701]
Coordinates
chr11:118014574-118019732:+
Coord C1 exon
chr11:118014574-118014722
Coord A exon
chr11:118014723-118019606
Coord C2 exon
chr11:118019607-118019732
Length
4884 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
3' ss Seq
ACTGTCCTTTCTCTCCTCAGGAG
3' ss Score
12.65
Exon sequences
Seq C1 exon
GCCTCTGGCTGTACCTGGCAGGGAGCAGCCTGCCCTGCCTCACGCTGATTGGCTCTCCTAATTTTGGGTACAGGTCAGTTCACCGGGACCTGGAAGCCCAGATTGCCATCGTGACGGAGAGCCGGTCCCTGCAGCAGCAGCTTCATCAG
Seq A exon
GTTGGTTGGAGCGGTAGGGTTCTTGGGTACATGGTTGTCCTCACAGGCGGCTCGTGCCTTTGTCAGTAAAGACAGGAAGTGAGACTGTGTGTCTCTCAAGTCTAAGAGAAACCCTGCAAGGCTAGACCTTTGACTATTGATTGCACTGCCAGGGTAGGCTTGAATCTTGCCAAGGCCATTCCCTCCTTCCATGCTGGAGAGACCACCATTTCCTCACTGGGGCATGGGGCCCAGTCGTTTCTAAAAGGGAGGGTGAATCCCAGGGTTGGCTGTGGCTGTGTGGCTGTGGCCCTCCCTGTGGAGCAGGCAACAGACAGCTCAGGACTCAGACATGCTGTCCTGTGAATTCTCCTGCAGCAGAGCCCTGCGCTTTGGTCTTGGAAGGACCTAACAGCTTTGCTTTGCAGGAGCCCCTGTGTGGGTTGGAACAAGATTCCTATTGGAGTCTTGGATATAGGACTCTTGCTCCCAGGCAGACCTCCAGAGCCGTGCTTGGTGGTTTTTATTTTGGTTATTTAAGTCTATCATGTGTGTATGAGGTGAGTGTGATGTGCGTGTGCCACGACACCTGTGTGAAAGGTAGAGGTCCATTTATGCAAATGGGCTCTCTTAAGGTATTTGCGTCTCGGGCTTGTAGGCCAGGCTCCTTCTGTGCTGAGCCCTCCCGCTAGCCTGCACACTGACATCAGGCTGCGGTGTTTGGGAATGGCTGTTCACAGCTTTGCTGGTGAGTGGGTGGGGAAGTGGCTCTTACTGCTTTGTTCTCTGGACCTGCTACTGTGTCTGGAACCTTGTCACCAAGGGCCAGGTGCCAGTAAGGTTCTGTGACAGGGCAAGGGGAAGTGACAACAGCCATGCCCTATAGCCAGCGGGTGATTGGGTGTGCTAGCAGATTTCCTTCAGCTGACTGAGGAAGCTCTCAAGCTAAGGGCTTCCCATAACAGGGTAACTGTTAGCCTCGGAGCCTGACTGTGAGGAAGGGGCGAGCCTGTGGCTCTGGACAGTGGGTCTGCCGGATTGTTCTTGCTGGTGCAGAGAGCTCTGTGCGCAGATGCCTCCCCAGAAAGAGCTGCTAATGCTTCTGGCCTAGGCAAGAATGAATTCTGGGAGATTTGGGGAAGCAAGTGCCCAGGCTTGTGCCCCAGGTCCTAGTACTGACAAGACCCCACTTCCTGAGATGGGGACTTAAACCCACATCCTGGATTTTGAGAAAGCAGCCTGGTTGTGGTCTGAGCTGATTTCTCAAATGACATACTTGGGATAGTTTCTTCCCAAACCTGCCTCCCAGGGGCTTTGGATGGTGGGAAGGTGGCAGCTCAAGCTGCTGTAGCGCTTCCATTCTCTACAGTGTATTGATTCAGGGTCTGTGAAGTAGAGATGAGTTTCTAGATGGCTCCATTTGCTGCAGTGTGCTTTGAGGCCTGCAGCTGGCCTCCTGACCTTCAGTGTCTGGTTGCTGAGTGCTGTGTGCAGCCTCGAGTGCCCAGCCCTTGGCCTGTGGCCCCACACTCAGAAGTCTGCTGCAGTTCTCTTGGGACCCAGGGAAGGGCCCTGTCTGTGTATGGAGCCTTGAAAATGGAAGATATTTTTACCAGAGCCCCGAGTCCCTCCCTAGTAGAGCGAACAGTAAGAACTGAAAGCGTCCTGGTTTGGTTCAGAGCTTAGCTTCCCACCTGACCTGAGAGGCTCCTCGCACAGCACTGTGACCCCACCAGCTGACTTCCTCCTCCATCCCTGCTGCGGCCGCTGTGAGGACGCAGAAGCGTTTCTGGTAATTTAATTGAGATCTTGGCTGGGTGTTTACTAAAGAGCAGAACTGGAGCTGAGTCTGTGGAGACTTCTACAAACCAGTCCCAAGCTGGCTCCTCCACAGAAACAGCCCATAGAACCTGAGGCTGGTATTCATGGCGTGTGGGGACTGCCATGATGGGAAAGCCAGCTGTGAGGACAGAGTTTGAAAGTTTGGCATGGGCATTGGCTTCAGGATGCTGCCTCTGCGACAGTCACAAGTTTGAAGCAAGTACAGGGGATGTGGAGCTGGGCCCTGGGTCTCTACCTCTGTGGGCAGTGCCTCAGAGACTTCGGTGAGGTGTCCTCTCAACTCTGCTGACTGGAGGGACTGCTGATGAGTCTGTCCCTCCTGAGCTGATCTCTTCTCGGTTTTTTCGAGACAGGGTTTCTCTGTATGGCTTTGGCTCTCCTGGAACTCAGTCTGCAGACCAGGCTGGCCTCAAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGACTAAAGGTGTGCGCCACTTTCTCAAATGACATACTTGGGATTGCTGCTGCTCCTCCTGCTCCTCTTGCTGCTGCTGCTGCTGCTCCTCCTTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCCTCCTCCTCCTCCTCCCCTGGCTCCTCTTTCGGATGATGCTGGCCCTGCAAGGCTCTGTCAGGACCTCCTGTGTATGCTGATGGTCATAAAGCTGTGACCCTCAGAATGGGTGTAGGTGTGGCCCAAATGCTCAGGAATGCATCTGCCAGAACATGAGGACAGCATGTGTAGAGTGTCCATACAAATGTCCCCACAGCTGGCTTCCCCATTGTGACAGTTCCCACATGCCTTGTGTCTTAGGGTTTCTGTTCCTGCACAAACATCATAATCAAGAAGCAAGTTGATTCAAGAGGAAAGGGTTTATTCAGCTTACACTTCCACATGGCTGTTCATCACCAAAGGAAGTCAGGACTGGAACTCAAATAGGTCAGGAAGCAGGAGCTGATGCAGAGGCCATGGAGGGATGCTGCTTACTGGCTTGCTTCCCCTGGCTTGCTCAGCCTACTCTCTTATAGAACCCAGGACCTCCAGCCCAGTAGGCCCTCTCACCTTGATCACTAATTGAGAAAATGCTTTACAGCTGGATCTCATGGAGGCATTTCCTCGAGGGAGGCTCCTTTCTCTGTGATAACTCCAGCTTGTGTCAAGTTGACACACAAAACCAGCCAGTACACCATGAATACTGCTGTCCGGTTTTATGGGCTGTGGTCCGTGGAGGAGCCAGCTCTGGTCTGGGGGAGGGGCTGGTTTGCAGAAGTCTCCACAGACCCAGCTCCACAAACCTAATATGATTGGAGACAAACATGTATATGTTAGTTTTCTTTTATTACCATCCCTTCTGTACACACACACACACACACACACACACACACACACACACACTTACGTACGCGCGCACGCACGCACACACTCACACACACTGGTGCCACAACATGGTGTGGACAAGTTAAAGGAGTCACTTCTCTCCTACCGTAGGAATTGTCAGGCTTGGAGGCAGTGCCTTTACCAATCAGTCTGCATGTATCTTTTAAAACTTGGTTTTAAAGGTAAAAGTTTAAACATTGCTTGGGACAGAAGAAACTGTGTCTTCATGGGACTCACTTGGATCACTCTGTCTTCATTCCGACTCTCAGCCTTCCACTCCTGTATGTACCAAGTCCAAGGAGCCAACCACTGTGGATGGGAAATGCGTAAGGAGGTTTGCTCTGACTTGGATATGCTCAGGCTTTGTCTTGTTTCTCTGAAGAGTGCAGTAGAACGTCATACGATACATGACATTGATGATATTACATCTTATACTTACAGTTGTGTTAGATATTTTAAATAACATGGTGTTGAAAAGTCTTGAGACCTGGCTGGAGATCAGAGTCTATCCAGCTCTTGTTGAGGACCCAGCGCCCATTGGGAGGCTCACAACTGCCTGTAACTTCAGCTCCAGGGAATATGATGCCCTCTTCTGGCCTCTGTGGGAACTGCATGTATACACTCATCTATTTGCAGATACACATAAAATGTCTATGTGAGAGGCAGGCCGGGTGGTTCAGGGCTGCAATCTCAGCAGCTCTGGAAGCTGACACAGAAGGACTGTAAGTTCAAGGTTAGCCTAGGTAATTTAGTAAGATCCTATCTTAGAGTTTTTTAAAAAGTGGGCAACTGGAGCTGTAGCTGGGTGGTGGAGCACCCTGCTCACCTAGCAGGCACGAGGCTCTAGGCCCAATTGCCAACGCTGAAACGGGATAAAAGCGTGCCTGTGTGAGCATGTACACGCCGCTGTTGGATTCAGGGCTTGAGTGTCTGAAGGGTTTGATGTCTGGCGGTCATGTGTTCTCTGGGACCAGCTATATGTTTATGTTGTGTGTCTCATGTCTGGTTTCTGTGGTGTCTGGTGGGCATGCGTTCAGCTGTATGTTGTGTGTCTATGTCTGGTTTCTGTTACTTTTCTTTACTTTCCTCTTAACGTCAGTCCTGACACTGGTGTGTCATCTGGGTTAATTTATAAGTGAATACTGGATATTTAGGTGGTTTCCAGCCTTTCTCCACTGTAAATGTGGCTGCACAAGTGTCTGTAAAGATCTTACTGTGGGGGTGAGATCATAGTTGCTTTCTTGGGACAACCTCTGGCGAGTGTCACTTCCCTTCAGCAGTGGTGGCTGATACTGCACAGTGACCTGCAGTTGGTGGAAGGGAACCTGCCATGTGTTAGACATTTCTTTTCTATGTTACACATGATGAGCTAGGAATACTGCTACTACTGATTGACACCTACCCCAGACCCCTGTTTCTTATCTTACTTAACTCACACTAATTTATTTCACGAGGGGTAAACATCTAAAATAGTTTTCCCACCAGCTCTAACTGTTGAGCTAAATCAGCGATATACAGAGGCAGAGCCTCTTGGCTGGGGTCCTCAGGAGGCTGTGTGGCTGGCGCCTCTGGCCGGTCTTGTGGACAGACAGCTAGCTCTGCTGTACCAGGTGTCTAGGAACCACAGAGTGACCCACATCTAGTGCCTGACTGTCCTTTCTCTCCTCAG
Seq C2 exon
GAGCAAGAGCAGCTCTACCTGCGGTCTGGTGTGGTGACCTCCGCAACCTTTGAGCAGCCAGGGCGGCAGGTCAAGCTGTGGGTGAAGATGGTGACCCCGCTAATCAAGAACTTCTTCTGAGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000017715:ENSMUST00000132676:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF130911=PLDc_2=FE(28.8=100)
A:
NA
C2:
PF130911=PLDc_2=PD(2.9=12.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types