GgaINT0129167 @ galGal3
Intron Retention
Description
NA
Coordinates
chr18:7920368-7920583:-
Coord C1 exon
chr18:7920504-7920583
Coord A exon
chr18:7920424-7920503
Coord C2 exon
chr18:7920368-7920423
Length
80 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
TGATTTCCATTTCTCCACAGTCA
3' ss Score
9.15
Exon sequences
Seq C1 exon
GTTCCCCTCTTTGCTTGTCTACAAGGTCCCAATGGAAGATGCACTGCCCCTATCTCAGTCTTTCTCCAAGATAGAGGAAG
Seq A exon
GTAAGAGCAAAGCAACATGACTGTTTGAAAAGGTGAAATACTAACAGGTAATTTTCAACTTGATTTCCATTTCTCCACAG
Seq C2 exon
TCAAACAAAACTTCAACCTCGAGGAGTACAGCTTCTCTTTGAATACTTTGGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021399:ENSGALT00000006909:36
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCCCCTCTTTGCTTGTCTACA
R:
TGAGCCAAAGTATTCAAAGAGAAGCT
Band lengths:
135-215
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]