GgaINT0129361 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1P3X4]
Coordinates
chr18:388595-390045:-
Coord C1 exon
chr18:389790-390045
Coord A exon
chr18:388838-389789
Coord C2 exon
chr18:388595-388837
Length
952 bp
Sequences
Splice sites
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
3' ss Seq
ATGACTATCTTTCCCCCCAGGAA
3' ss Score
11.43
Exon sequences
Seq C1 exon
AGAATCCATCTTCTGCATCCAGTACAATATTCGTTCATTCATGAATGTCAAGCACTGGCCCTGGATGAAGCTGTTCTTTAAGATCAAGCCGTTGCTGAAGAGCGCAGAGTCTGAGAAGGAAATGGCCAACATGAAAGGGGAGTTTGAGAAGACCAAGGAAGAACTTGCAAAGTCTGAGGCAAAGAGGAAAGAGTTGGAGGAGAAAATGGTGTCCCTGCTGCAGGAGAAAAATGACTTGCAGCTCCAAGTGCAGGCT
Seq A exon
GTGAGTATTATTAGTATATTTATTCCTGGGCAAAACAAGCAAAGTTTAAGTTATCTTTCACAGTACAGAATCCTCCAACTGCACACAAAACTGCCTTAAAAGTATTCTAACCTGCATCACTAGAGGTAAAATTCATTGTCACCATTATAATGTGGAGTTCCAGCTTAGGAAGAATTTTGTAAGTCTCAGCCTGTAGGTATGTTACTCCCTGTAAGTTCACATTACAAGTTCCAGATGTAGTCAGTAGTGAATTAGTAAATACAGATAATGGAGAGAGATTATAGTTGACTGCAAACTGTCTTTAATCAGTTGTCAAAATAAAAGAGCCTTGTGACATTTCTTAAGATACATGGCATCTCACCTGTACTCCTGCAGCTACTACTACTTACTACTCCAGAAAGACACAAATACCCTCTACATCCAAATACAACTGTATTTCAGTGTATTCAATGTTCTTTTGCACATCAAAAGTTTTGGCAACATTTGTCAATTTTTTGAGCATTAAAGAGTCTACTTCAGAGCTTCAGAATACAGTCAGATTTAAGTGGTTGCCCACAATTGCATCTAGATTATATATTGCTTTGTTCAAATTCAAATTCACTTATGCTAACAAAACTCTTCACAAAGATAAAACAAAAAGATCTCTGTACAATTATACCTCTTATAAACTTTCAAGCAAAGGAAACAAAGCCTGCAGTAAATATATATATATATATATATTTCTAAATCATATAAATAAATACAGCAAGAGAAGACTTGAGGATAAAATAGAACTAAACAAACAAACAAAAAAAATCTCAGTAAAAAAAAAAACAACACAAAAAATATTTCTATCAAGATTAAAAAAAAAAGAAAGAAATTTCATGTCTTCATATTCAAAATGAAAGACTCCTTTCCTATTCCAAGACTGTTAAAATTTGGAAGTAGAAAAAATGACTATCTTTCCCCCCAG
Seq C2 exon
GAAGCAGATGCCTTAGCTGATGCTGAGGAAAGGTGTGACCAGCTCATCAAAACCAAAATCCAGCTGGAAGCCAAAATTAAGGAGGTGACAGAACGGGCTGAGGATGAGGAGGAAATTAATGCTGAACTGACGGCCAAGAAGAGGAAACTGGAGGATGAATGTTCAGAGCTGAAGAAAGACATAGATGACCTGGAGTTAACACTGGCCAAAGTTGAGAAGGAAAAGCATGCCACTGAAAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028102:ENSGALT00000001420:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.163 A=NA C2=0.395
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PU(26.9=61.6),PF135141=AAA_27=PU(7.0=60.5)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(40.6=100),PF135141=AAA_27=FE(10.7=100),PF0157614=Myosin_tail_1=PU(29.5=48.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTGGATGAAGCTGTTCTT
R:
CCTCTTCTTGGCCGTCAGTTC
Band lengths:
343-1295
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]