HsaINT1024110 @ hg38
Intron Retention
Gene
ENSG00000264424 | MYH4
Description
myosin heavy chain 4 [Source:HGNC Symbol;Acc:HGNC:7574]
Coordinates
chr17:10453643-10454810:-
Coord C1 exon
chr17:10454555-10454810
Coord A exon
chr17:10453886-10454554
Coord C2 exon
chr17:10453643-10453885
Length
669 bp
Sequences
Splice sites
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
3' ss Seq
TGCTTAATTTCTCCCTTTAGGAA
3' ss Score
11.72
Exon sequences
Seq C1 exon
AGAGTCCATCTTCTGCATTCAGTACAACATCCGTGCTTTCATGAATGTGAAGCACTGGCCCTGGATGAAGCTGTATTTCAAGATCAAGCCCCTCCTCAAGAGTGCAGAGACAGAGAAGGAGATGGCCAACATGAAGGAAGAATTTGAGAAAACCAAAGAAGAGCTGGCTAAGACAGAGGCAAAAAGGAAAGAACTAGAAGAAAAGATGGTGACGCTAATGCAAGAGAAAAATGACTTACAACTCCAAGTTCAAGCT
Seq A exon
GTAAGTATTATACATTGCAGTTCAGCCACATCTTATTACTTTTAACGTTTTAAAATGAATGGTTTCCACTGAAACATTTGTTCTGATTGTTTGCTGTTCAAAAACACCAAGACTCGGGCATAAAGAAGCAATAGATGCAAAGTCACATATCATGCTGCACACGTTCATATGTGCATTCACACACAGTTTGGTCATCAGTGAGCAAATTCATAAAAATATCAATAGACATTTTCCTTTATTTATGGAACTTTCTCTCAGATCAGATTATTCTTTCTTTAGTGTATTTTTGTGCATAAAATAGAAGTTATGTTGTTTTTATCAGGGCAGAGAAATGGCTAAGTTAATCCCCTCTTAAATGTGAGAAAACTGAGTCCTACAATGAACAAGCGATTTTTCCAAAGTTGCAAAGGTTAGTAAAGTGGCAGATTTTTGCCAAAGGGCTAGTTTTCCTGATTTGGCCTGCCACACATGAATATCTGAAGGAAATTTGTTATTATACTTGATCAGTAGATAACAGTATTAACATTTTGTCTGTTTCATTTTAAAAGTTAGCAACTGGTATACATGTTGACCAAACAGGTAGTCACTGAAATTTCCACCTTATAATAAATTATTGTGTGCTTATAGATATAGCTCAGACAAATGAAAATGCTTAATTTCTCCCTTTAG
Seq C2 exon
GAAGCAGATGCCTTGGCTGATGCAGAGGAAAGATGTGATCAGTTGATTAAAACCAAAATCCAACTTGAGGCCAAAATCAAAGAGGTAACTGAAAGAGCTGAGGATGAGGAAGAGATCAATGCTGAGCTGACAGCCAAGAAGAGGAAACTGGAGGATGAATGTTCAGAGCTCAAGAAAGACATTGATGACCTTGAGCTGACACTGGCCAAGGTTGAGAAGGAGAAACATGCCACAGAGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000264424:ENST00000255381:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.233 A=NA C2=0.383
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCCTGGATGAAGCTGTAT
R:
TCCTCTTCTTGGCTGTCAGCT
Band lengths:
346-1015
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains