DreINT0173881 @ danRer10
Intron Retention
Gene
ENSDARG00000079564 | vmhc
Description
ventricular myosin heavy chain [Source:ZFIN;Acc:ZDB-GENE-991123-5]
Coordinates
chr2:24607857-24608437:-
Coord C1 exon
chr2:24608182-24608437
Coord A exon
chr2:24608100-24608181
Coord C2 exon
chr2:24607857-24608099
Length
82 bp
Sequences
Splice sites
5' ss Seq
GCGGTCAGT
5' ss Score
6.52
3' ss Seq
TTACATATGTTTAAAAACAGGAG
3' ss Score
5.39
Exon sequences
Seq C1 exon
GGATGCCCTACTGGTTATCCAGTGGAATGTCCGTGCCTTCATGGGGGTGAAAAATTGGCCCTGGATGAAGCTTTTCTTCAAGATAAAACCTCTTCTCAAGTCAGCAGAAGCAGAGAAAGAGATGGCAAATATGAAAGATGAATTTGCCAAGCTCAAAGAGGCTTATGCTAAATCCGAAGCGAGAAGGAAAGAGCTAGAAGAAAAAATGGTGTCTCTTCTCCAAGAGAAGAATGACCTACAACTTCAAGTTCAAGCG
Seq A exon
GTCAGTTAATATTTGCAACACATGTAGGTACATGAGTGTGTAGTATAGAAATCACTGTAATTTTACATATGTTTAAAAACAG
Seq C2 exon
GAGCAAGACAATCTCTGTGATGCAGAGGAACGATGTGACCAGCTCATCAAAAACAAGATTCAGCTTGAGGCTAAAGCCAAAGAGCTCACCGAGCGACTTGAGGATGAGGAGGAGATGAATGCAGAGCTGACAGCTAAGAAGAGAAAGCTGGAGGACGAATGCTCTGAGCTGAAGAAGGATATTGATGATCTGGAGCTCACTCTGGCTAAAGTCGAGAAAGAGAAGCATGCTACTGAGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079564:ENSDART00000099532:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.407
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PU(27.7=61.6)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(41.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGAAGCGAGAAGGAAAGAGC
R:
CTCGGTGAGCTCTTTGGCTTT
Band lengths:
176-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]