MmuINT0103504 @ mm9
Intron Retention
Gene
ENSMUSG00000057003 | Myh4
Description
myosin, heavy polypeptide 4, skeletal muscle [Source:MGI Symbol;Acc:MGI:1339713]
Coordinates
chr11:67064254-67065450:+
Coord C1 exon
chr11:67064254-67064509
Coord A exon
chr11:67064510-67065207
Coord C2 exon
chr11:67065208-67065450
Length
698 bp
Sequences
Splice sites
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
3' ss Seq
TGTACTATTTCTCCCATTAGGAA
3' ss Score
9
Exon sequences
Seq C1 exon
AGAGTCCATCTTCTGCATTCAGTACAACGTCCGCGCCTTCATGAATGTGAAACACTGGCCCTGGATGAAGCTGTATTTCAAGATCAAACCTCTGCTGAAGAGCGCGGAGACCGAGAAGGAGATGGCCAACATGAAGGAAGATTTTGAGAAGGCCAAGGAGGATCTGGCTAAGTCAGAGGCAAAAAGGAAGGAACTAGAAGAAAAGATGGTAGCTTTGATGCAGGAGAAAAATGACCTGCAGCTCCAGGTTCAAGCT
Seq A exon
GTGAGTGTCGGATACTGCATATAGTCCTATCATAGTTCATAGTCAGGATGTGACTGCCTATAAGCAATCCCAGGGCTCAGAGTAAACAATTTCTATCCAGGCGCCTGTTGTGATTGCCTGCCCTTCAAACCATTAAGATTCAAACCCAAAGAAACAGCAGCCTAATGGTGCTTACTATGTGCATTGTACACAGCCTGGTTCATGGTGAACAAAGTCATGAAAACAGCTAGACATTTTCCTTTCTGTATACAACATCCTCTTATATTAGAATATTCTCTCTTTGGTAAATATAGGTAAATGGAACTAGAAAGTACATTATTTTTATCAGAGCAGGGAAAAACAAAAAACAAAAACAGGCTAATTTAAGCCTGTAATTGAATGTGAGGGGAAAAACCCTGAGTTCAAGAATTAGTAAATGACTCTTTCATAAGGACTGAGGGCTAGTAAGTCATTTGTATTTTCAACAAAGCCACTTTTTCCTCATTTTACCTTCTACACATAGATATTTAGAGTTAATATATTAATCTACTTGGTCAACATCTTGAGATTGGTGCATTTTGTCTAATTTTTTTTAAAGTTAGCAAGTTAATGGCCTACTCAAAGATCAACTGGTAGTCATCTGTTCCCAATTTTGAATACATTATAGTGTATTTTCGATATATCCTATACAAATGGAAGTGTACTATTTCTCCCATTAG
Seq C2 exon
GAAGCAGATGGCTTGGCTGATGCTGAGGAAAGGTGCGACCAGCTGATCAAAACCAAAATCCAGCTGGAGGCCAAAATCAAAGAGCTGACCGAGAGGGCCGAGGACGAGGAGGAGATCAACGCGGAGCTCACGGCCAAGAAGAGGAAGCTGGAGGACGAGTGCTCAGAGCTGAAGAAGGACATTGACGACCTTGAGCTGACACTGGCCAAGGTTGAGAAGGAGAAGCACGCCACGGAGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057003-Myh4:NM_010855:21
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.130 A=NA C2=0.395
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PU(28.5=64.0)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(41.5=100),PF0157614=Myosin_tail_1=PU(29.1=48.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCCTGGATGAAGCTGTAT
R:
CGTCCTCCAGCTTCCTCTTCT
Band lengths:
358-1056
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: