GgaINT0129711 @ galGal3
Intron Retention
Description
NA
Coordinates
chr18:2126628-2127782:+
Coord C1 exon
chr18:2126628-2126786
Coord A exon
chr18:2126787-2127718
Coord C2 exon
chr18:2127719-2127782
Length
932 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
GCCTCCTTGTGCACTCCCAGGTT
3' ss Score
7.36
Exon sequences
Seq C1 exon
GCAGTCCTTCCACCTGGCCGTGGACATGCAGAGCTTCAGCTCCAGCATTGTATCAGCTCAGGAGATGCGCATCATCTGGTCCTGGATCCCCGAGCGCTTCTCCCTCTTCCCCCCACTGCTGCTCTTCTCCACCTCAGAAGATGGGTGCAGCCTGCAGAG
Seq A exon
GTGAGCGCAATCTGCCTGGTGGGCCGGGTCAGACAGACAGACATAACATTGGGTAAGGGTTGCTGTATAGAAAGGAGCAACTGCAACATCTGTGGGACGTATCTGAGGTCTGCTGGGGACACTCCTTGAAGGTCCTTTGAGAAAGGAGTGCCTTCTTCAGTGGCACATCGTGCTGAGAGGCTGCACAGAGCAGGCTGAGCTCAGGTACCACCCACGACAGTGGAGACATCAAACCTTCCAAACTCGAGCTAAGAGAGCCCAAGTGCCATAGTTAATGCCCAAATCTGCAACAAGTGAGGGAAGAGCCAAGGACCTGGTGACAGCTGCAGAGCAAAGGGCATGGGGAGAGCAGAAACATCCCCACAATGCTCCATGCTGGGCATTTCAATGAGACACAGCTCCCTGCTGTATGGGGAGAAGGTGCAGGGGCTGGCTGGGGGCTGCCCACTGCATCAGTGGCCTGTGGTTTTCCATGGGCTTCATTTGGGGATGCTGTAATGTTTGGCATAGTGCCCACGCTTGCACCACGAGCATGCCCTCAGCTCAGGGGAGGTGAGTGAGGGCCCCACAGCAAAATGTCCCCGCCCCATGTAGAGAAGTCCCGCAGTGTTTCACCTTGCCACGGCAGCAGTGGGGCTCACAGGGTGGGTGTCAGGCAGGAGCTTGGGCTCCAGGTGGATGAGCAGCACATTCATCCCCGAGCCTGCTTGGGAAACTGCTCCATGGAGCGTCCCCCCGAGCCTGGTGCTGAGAGTACGTGGGCAGACTTTATGTTTGGATTTATGTGAGCTGTTACCCACACTGCTGAGCAAAAGTGATGCCTTGAGAAGTCCCAAAGCCAGCTCCCCAGTGCCGGCACCAACAGAGGAGCTGCCCAAGCTATGTCACTGGTCTCAGCTGCTCACCAACGCAGCCTCCTTGTGCACTCCCAG
Seq C2 exon
GTTTTACTCGTGCTGTGAAGGTTATGAACCGACGGTGCTGCTCCTAAAAACAACGGAGGGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001244:ENSGALT00000039321:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0753411=TLD=PU(13.8=24.1)
A:
NA
C2:
PF0753411=TLD=FE(22.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTCCTTCCACCTGGC
R:
TCCCCCTCCGTTGTTTTTAGG
Band lengths:
222-1154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]