GgaEX1000224 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr18:2126628-2128622:+
Coord C1 exon
chr18:2126628-2126786
Coord A exon
chr18:2127719-2127782
Coord C2 exon
chr18:2128527-2128622
Length
64 bp
Sequences
Splice sites
3' ss Seq
GCCTCCTTGTGCACTCCCAGGTT
3' ss Score
7.36
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GCAGTCCTTCCACCTGGCCGTGGACATGCAGAGCTTCAGCTCCAGCATTGTATCAGCTCAGGAGATGCGCATCATCTGGTCCTGGATCCCCGAGCGCTTCTCCCTCTTCCCCCCACTGCTGCTCTTCTCCACCTCAGAAGATGGGTGCAGCCTGCAGAG
Seq A exon
GTTTTACTCGTGCTGTGAAGGTTATGAACCGACGGTGCTGCTCCTAAAAACAACGGAGGGGGAG
Seq C2 exon
GTGTGTGGGGCATTCCTCTCCTCTGACTGGAGTGAAAGGAAGAAGAACGGGCTGACATCGGGCTTTTTTGGGACAGGGGAATGCTTTGTGTTCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001244-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0753411=TLD=PU(13.8=24.1)
A:
PF0753411=TLD=FE(22.3=100)
C2:
PF0753411=TLD=FE(33.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATCAGCTCAGGAGATGCGC
R:
AGTCAGAGGAGAGGAATGCCC
Band lengths:
138-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]