BtaEX6108061 @ bosTau6
Exon Skipping
Description
Bos taurus TBC1 domain family, member 24 (TBC1D24), mRNA. [Source:RefSeq mRNA;Acc:NM_001046296]
Coordinates
chr25:2000892-2003235:+
Coord C1 exon
chr25:2000892-2001050
Coord A exon
chr25:2002173-2002236
Coord C2 exon
chr25:2003140-2003235
Length
64 bp
Sequences
Splice sites
3' ss Seq
AGGGCGTTCTCTGCCCCCAGGTT
3' ss Score
9.84
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
GCAGTTTGTGCACCTGGCTGTTCATGCAGACAACTTCCACTCAGAGATCGTCGGTGTGAAGGAGATGAGAGACATCTGGTCGTGGGTCCCTGAGCGGTTCGCCCTCTGCCAGCCCCTCCTGCTCTTCTCCTCACTGCAGCATGGATACAGCCTGACCAG
Seq A exon
GTTCTACTTCCAGTGCGAAGGACGAGAGCCCACTGTCCTGCTGATCAAGACTACGCAGAAGGAG
Seq C2 exon
GTGTGTGGCGCCTACCTGTCAACAGACTGGAGTGAGAGAAACAAGTTTGGGGGCAAGCTGGGCTTCTTCGGGACTGGAGAGTGCTTCGTGTTTAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005458-'14-10,'14-5,15-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0753411=TLD=PU(15.1=24.1)
A:
PF0753411=TLD=FE(24.4=100)
C2:
PF0753411=TLD=FE(36.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTCGGTGTGAAGGAGATGA
R:
CAGTCTGTTGACAGGTAGGCG
Band lengths:
141-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]