HsaEX0063862 @ hg19
Exon Skipping
Gene
ENSG00000162065 | TBC1D24
Description
TBC1 domain family, member 24 [Source:HGNC Symbol;Acc:29203]
Coordinates
chr16:2548239-2549931:+
Coord C1 exon
chr16:2548239-2548397
Coord A exon
chr16:2549358-2549421
Coord C2 exon
chr16:2549836-2549931
Length
64 bp
Sequences
Splice sites
3' ss Seq
CATGCGTGTCTCTACGCCAGGTT
3' ss Score
8.25
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
GCAGTTTGTACACTTGGCCGTCCATGCAGAGAACTTCCGCTCGGAGATCGTCAGCGTGAGGGAGATGAGAGACATCTGGTCCTGGGTCCCCGAGCGCTTTGCCCTGTGCCAGCCCCTTCTGCTGTTCTCCTCCCTGCAGCACGGGTACAGCCTGGCCAG
Seq A exon
GTTCTACTTCCAGTGTGAAGGACATGAGCCTACCCTCTTGCTCATCAAGACCACGCAGAAGGAG
Seq C2 exon
GTGTGTGGTGCTTACCTGTCCACAGACTGGAGTGAGAGAAATAAGTTTGGAGGCAAACTGGGCTTCTTTGGGACCGGAGAATGCTTTGTGTTTAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162065_MULTIEX1-3/4=2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.109 C2=0.006
Domain overlap (PFAM):
C1:
PF0753411=TLD=PU(14.4=24.1)
A:
PF0753411=TLD=FE(23.3=100)
C2:
PF0753411=TLD=FE(34.4=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCTGCTGTTCTCCTCCCT
R:
CAAAGCATTCTCCGGTCCCAA
Band lengths:
133-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)