DreEX0077472 @ danRer10
Exon Skipping
Gene
ENSDARG00000069339 | tbc1d24
Description
TBC1 domain family, member 24 [Source:ZFIN;Acc:ZDB-GENE-050809-65]
Coordinates
chr24:39248280-39252594:+
Coord C1 exon
chr24:39248280-39248438
Coord A exon
chr24:39250479-39250542
Coord C2 exon
chr24:39252499-39252594
Length
64 bp
Sequences
Splice sites
3' ss Seq
TGTTCTGATGTCTCATTCAGGTT
3' ss Score
10
5' ss Seq
GAGGTAACT
5' ss Score
8.77
Exon sequences
Seq C1 exon
GCAGAATGTCCAGCTAGCCGTGAACGCAGATAATTTCAGCTCGGAGATCGTCAGCGCTAAAGAGATCCGAGATATCTGGTCGTGGATCCCGGAGCGATTCGCTTTGTGTCAGCCACAGCTGCTTTTCACCACATCTACACACGGCTGCAGCCTCAACCG
Seq A exon
GTTTTATGCACATTGTGAGGGATATGAGCCGACGCTGTTGCTCATCAGAACTACAGACAGAGAG
Seq C2 exon
GTCTGCGGAGCCTTCCTGTCCACTGATTGGGAAGAGAGAAAAAGGGGCGGGAACAAGCTGAGCTTCTTTGGCACTGGAGAGTGTTTTGTTTTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000069339-'5-6,'5-5,6-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0753411=TLD=PU(14.1=24.1)
A:
PF0753411=TLD=FE(22.8=100)
C2:
PF0753411=TLD=FE(33.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATATCTGGTCGTGGATCCCGG
R:
CGCCCCTTTTTCTCTCTTCCC
Band lengths:
137-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]