MmuEX0046467 @ mm10
Exon Skipping
Gene
ENSMUSG00000036473 | Tbc1d24
Description
TBC1 domain family, member 24 [Source:MGI Symbol;Acc:MGI:2443456]
Coordinates
chr17:24182450-24183852:-
Coord C1 exon
chr17:24183694-24183852
Coord A exon
chr17:24182786-24182849
Coord C2 exon
chr17:24182450-24182545
Length
64 bp
Sequences
Splice sites
3' ss Seq
CATTTGCTCTCTGCCCCCAGGTT
3' ss Score
11.55
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
GCAGTTTGTGCACTTAGCTGTCCATGCAGAGAACTTCCACTCAGAGATTGTCAGCGTGAAGGAGATGAGAGACATTTGGTCCTGGATCCCTGAGCGCTTTGCCCTCTGCCAACCCCTCCTGCTCTTCTCATCACTGCAGCATGGGTACAGCCTAAGCAG
Seq A exon
GTTCTATTTCCAGTGTGAAGGACATGAGCCCACCCTCCTGCTCATCAAGACCACTCAAAAGGAG
Seq C2 exon
GTCTGTGGGGCTTACCTGTCAACAGACTGGAGCGAGAGGACTAAATTCGGAGGCAAGCTGGGCTTCTTTGGGACTGGAGAATGCTTTGTTTTTAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036473-'27-35,'27-32,29-35
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0753411=TLD=PU(12.0=40.6)
A:
PF0753411=TLD=FE(11.1=100)
C2:
PF0753411=TLD=FE(16.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACTCAGAGATTGTCAGCGT
R:
TTGACAGGTAAGCCCCACAGA
Band lengths:
145-209
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types