GgaEX1057389 @ galGal3
Exon Skipping
Gene
ENSGALG00000009217 | TBC1D24
Description
NA
Coordinates
chr14:14679124-14682275:-
Coord C1 exon
chr14:14682117-14682275
Coord A exon
chr14:14681119-14681182
Coord C2 exon
chr14:14679124-14679219
Length
64 bp
Sequences
Splice sites
3' ss Seq
TTGTGTGCTTTGCACTGCAGGTT
3' ss Score
9.43
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GCAGAATGTGCACTTGGCAGTCCACGCAGAGAACTTCAAGTCTGAAATTGTCAGTGTGAAAGAGATGCGAGATATCTGGTCGTGGATCCCAGAGCGCTTTGCACTTTGCCAGCCCCTCTTGCTCTTCACCACCTTGGAACACGGCTGCAGTCTGAGCAG
Seq A exon
GTTCTATTCTCACAGTGAGGGACATGAGCCTACTCTTCTTCTCATCAAGACCACAGCAAAAGAG
Seq C2 exon
GTCTGCGGTGCTTATCTGTCCACCGACTGGAGCGAGCGCAGGAGAGGTGGGAACAAGCTGAGTTTCTTTGGAACTGGGGAGTGCTTTGTGTTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009217-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0753411=TLD=PU(12.0=24.1)
A:
PF0753411=TLD=FE(19.4=100)
C2:
PF0753411=TLD=FE(28.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTGGTCGTGGATCCCAGAG
R:
CTCAGCTTGTTCCCACCTCTC
Band lengths:
148-212
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]