RnoEX0088901 @ rn6
Exon Skipping
Gene
ENSRNOG00000052204 | Tbc1d24
Description
TBC1 domain family, member 24 [Source:RGD Symbol;Acc:1306143]
Coordinates
chr10:13554820-13556042:-
Coord C1 exon
chr10:13555884-13556042
Coord A exon
chr10:13555177-13555240
Coord C2 exon
chr10:13554820-13554915
Length
64 bp
Sequences
Splice sites
3' ss Seq
TGTGTGCTCTCTGCCCCCAGGTT
3' ss Score
13.2
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
GCAGTTTGTACACTTGGCTGTCCATGCAGAGAACTTCCGCTCAGAGATTGTCAGTGTGAAGGAGATGAGAGACATTTGGTCCTGGATCCCTGAGCGCTTCGCCCTCTGCCAACCCCTCCTGCTCTTCTCGTCGCTGCAGCATGGGTACAGCCTAAGCAG
Seq A exon
GTTCTATTTCCAGTGCGAAGGACATGAGCCCACACTCCTGCTCATCAAGACCACTCAAAAGGAG
Seq C2 exon
GTTTGTGGGGCTTACCTGTCAACAGACTGGAGTGAGCGGAATAAGTTCGGAGGCAAGCTGAGCTTCTTTGGGACTGGAGAATGCTTTGTTTTTAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052204-'2-5,'2-3,3-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0753411=TLD=PU(6.8=24.1)
A:
PF0753411=TLD=FE(11.1=100)
C2:
PF0753411=TLD=FE(16.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGGTCCTGGATCCCTGAGC
R:
TTGCCTCCGAACTTATTCCGC
Band lengths:
141-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]