GgaEX1000224 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NUF4]
Coordinates
chr18:2150985-2152979:+
Coord C1 exon
chr18:2150985-2151143
Coord A exon
chr18:2152076-2152139
Coord C2 exon
chr18:2152884-2152979
Length
64 bp
Sequences
Splice sites
3' ss Seq
GCCTCCTTGTGCACTCCCAGGTT
3' ss Score
7.36
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GCAGTCCTTCCACCTGGCCGTGGACATGCAGAGCTTCAGCTCCAGCATTGTATCAGCTCAGGAGATGCGCATCATCTGGTCCTGGATCCCCGAGCGCTTCTCCCTCTTCCCCCCACTGCTGCTCTTCTCCACCTCAGAAGATGGGTGCAGCCTGCAGAG
Seq A exon
GTTTTACTCGTGCTGTGAAGGTTATGAACCGACGGTGCTGCTCCTAAAAACAACGGAGGGGGAG
Seq C2 exon
GTGTGTGGGGCATTCCTCTCCTCTGACTGGAGTGAAAGGAAGAAGAACGGGCTGACATCGGGCTTTTTTGGGACAGGGGAATGCTTTGTGTTCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001244_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0753411=TLD=PU(14.9=24.1)
A:
PF0753411=TLD=FE(24.1=100)
C2:
PF0753411=TLD=FE(35.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATCAGCTCAGGAGATGCGC
R:
AGTCAGAGGAGAGGAATGCCC
Band lengths:
138-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]