GgaINT0129712 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NUF4]
Coordinates
chr18:2152076-2152979:+
Coord C1 exon
chr18:2152076-2152139
Coord A exon
chr18:2152140-2152883
Coord C2 exon
chr18:2152884-2152979
Length
744 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
CCCTGTGCTCTCTCCCAAAGGTG
3' ss Score
11.29
Exon sequences
Seq C1 exon
GTTTTACTCGTGCTGTGAAGGTTATGAACCGACGGTGCTGCTCCTAAAAACAACGGAGGGGGAG
Seq A exon
GTGAGTATTTCCTGAGCAGGGAGGTGGGCTGTGCTGTGTGACAGGGGAAGGTGCCCCCTGCCACCAATGCTGGCTCCACCGCAGTGCTGCAGGGACACCAAGAGGCACCTCAGACATTGGCTAAGGGGGGGGCTGCTAGTCAAAGAGGAGTCTGTGAGATGGAGAGAGGCCACGAGAGAGGCTTTATTGCACATGGAGACTGAACCATGAAGCCTTTGCTAAGCAGACTTCTCTGAAGTCAGCAGATGCTCTGCCTTAGCAAGGACTTCCTTTTAGTGCACTAAAGGCAACAATCCCTCCTTGACTGCAAGAGCAGCCACACGAGGGAAACGGAGTGAAGTAAGGACAGCTCTTAAAATATTTGAAAGTCGTGGAATAACTGCAGAACTACCTGAGCCAGGCATCTTCCCAGGGACTTCGAGAGTGGCTCGTAAACCCATATTTTATGTCTGCACTCTCCAACAAACAGCAGATGCAAGCACTGTAAATGGCTCGGGCATCCTAGAGATTTATTGGCCAACAAGTCCCAACCTCCCACACCCAGCACTTGAGTGCAGCGAAGAGAGAAACACTGCTGCCCCCAGGGCCTTGTGCAGACAATGAAAAGTGACTTATAAAACCTTGTTTCCTGCATGTTTTAGCTCATTTTCTCCCTTACATAGTCCCAGGGAGAGGCAGAGCCTTTGCTGTGCTGGCCTCACTGGAGGTTTCCACCCTGACAGCTCCCTGTGCTCTCTCCCAAAG
Seq C2 exon
GTGTGTGGGGCATTCCTCTCCTCTGACTGGAGTGAAAGGAAGAAGAACGGGCTGACATCGGGCTTTTTTGGGACAGGGGAATGCTTTGTGTTCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001244:ENSGALT00000039321:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0753411=TLD=FE(24.1=100)
A:
NA
C2:
PF0753411=TLD=FE(35.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]