GgaINT0130774 @ galGal3
Intron Retention
Gene
ENSGALG00000002576 | F1NI02_CHICK
Description
NA
Coordinates
chr19:4903407-4903933:-
Coord C1 exon
chr19:4903836-4903933
Coord A exon
chr19:4903485-4903835
Coord C2 exon
chr19:4903407-4903484
Length
351 bp
Sequences
Splice sites
5' ss Seq
TACGTAAGT
5' ss Score
9.27
3' ss Seq
TCCTCTCTTTCCATATGCAGAGA
3' ss Score
9.57
Exon sequences
Seq C1 exon
GTTGTGACTGACCTGAAGCTGCTCCTGAAGAGTTCGATCTCTGTCATTTCCACTCACCTGCTGCAGCTCATTAAGACCCTTGTGGAGCGCGCTGCTAC
Seq A exon
GTAAGTCCTTTCCCAAGTCCACGGTCTCAGCGTTCCTGGGACAGGAGACTTCTCTCTCCTCTCTTTGACTGATACCAATCAGGGCAGCAGCAAGGTCTTCTGCAGAGGATGTTGAAGTGAGACAGTATGTGACAGCACAGGGAAAGACAACGGGCCCTCTTTCTTCACAGTCTGCTTCAGGGAGACATTCCTCTTCCCCTAATATATTATGGGGATATAAGAAGAGGAAGGCATAGCACAACACAGGCTAAAGATGCTTTCATGACCTTGCCAGGAGACCTGAGAGTTTACCTGTCACAGCTCTCTCTGCAAACAGTTGCTGCTCACCTCTTCCTCTCTTTCCATATGCAG
Seq C2 exon
AGAAATTGATGTTATCATGCCTGGCTACACCCACCTGCAGAAAGCTCTGCCCATCAGATGGAGCCAGTTCCTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002576:ENSGALT00000039984:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0020615=Lyase_1=FE(10.8=100)
A:
NA
C2:
PF0020615=Lyase_1=FE(8.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]