BtaINT0003271 @ bosTau6
Intron Retention
Description
Bos taurus argininosuccinate lyase (ASL), mRNA. [Source:RefSeq mRNA;Acc:NM_001034428]
Coordinates
chr25:28251641-28252982:-
Coord C1 exon
chr25:28252885-28252982
Coord A exon
chr25:28251719-28252884
Coord C2 exon
chr25:28251641-28251718
Length
1166 bp
Sequences
Splice sites
5' ss Seq
GGCGTGAGT
5' ss Score
7
3' ss Seq
GTCCTTGCTCTTCCCCTCAGGGA
3' ss Score
11.28
Exon sequences
Seq C1 exon
GTGGTCACTGACCTCAGGCTGTGGATGCGGCAGAATTGCTCCATGCTCTCAGCCCTCCTCTGCGAACTCATCAGAACCATGGTGGATCGGGCAGAGGC
Seq A exon
GTGAGTCCCGGGGTCACCAGGTGGCAGAGAGGGCCAGGAGGGCAGCCAAGGTCTCTGCTCCCCTGAGACAGGTAGCCTGAATGCCAGACCTAAGTGGCAGGGTGAAGAGGGCAGGGGGGCCAGGCTCTGGGGTACTGGGAGCCCCAGAACTCCTGGGCCGAGTGAGGCAGAGCAGCCAGCAGTGGGCCATTTCTTTCAGCATCGCCTACCCACAGCTGGCCCAGCTTGACACGCAGGGGAGCTCACCCTTTGTGGATTCACAGGCTGGAGGCTAAGGCACCAGGCAGGTGCCCTGAAGCCTGAGGAAGGGGCTGGTTTGCTGGGGCTGCCAGAGAGTCCTTTCTCAGCTGCCTGCATCTCAGGTCGCCCATCGCTGCCCAGCACCACAGGCAAAGGAGAGAGCTGAGGGCTGCCTCCCACTGACCTCAGCCCAAAGCTCTGTGACATGACTGCTGAGAAGAGTCTACTTGTGTCAGAGACGGGGTTGAGCCTTCCTTGTCCCAACTCCCAGTAACCCCAGTTTCACTGACTTCACAACTAGGGGAAAACAAGGGCCCAGAAATGTCATCCTGTGGGAGACAGGTGTTGGGAGAATAGGGAGTGAGTGAGTGCTAATGAGTAAGGGTTTCTCTCTTGGGGTGATGGTACACTTTAAATGGGTGATTGGTATATTAATTATATATCAATAAAGTCATTAATATTAACAAACCAGAACCATCACCCACAGCATCTCTGCTACTGTGTAGCCTACGCTAAAATGTTCCCAGCTTTTCTGGGCTCCTCCAGGGCTCCTCTCATGCTCACAAACTCAGCCTCTCAGTGCCAGTGGTACCGGCCGTGCACCTTCCTCCCTGCCCTGGCTCCTGCCCAGATCTGCTGCCAAGGTGCAGAGGCGGGAGCTGAAGGTGTGATCTACATCAGGTCCTACACTCATCCCCTGAAGGCCCCACAGCCACGGCCCAGCACACTGCCTGCTTCCCAACCTTCGCTGACACCATGTATTGTCTTCAGGAGGTCACTTGGTCCCTCAAACAGGCAGATCCTTGGCAAGCCTGCCCTGCTGTTCCCAAGAGGGCCCCAGGCCTGCAGGGTCCCAAGTGTGACAGGCAGGCCTCACCTGAATCTTGAGAGCCCCTCACACACCCTGTCCTTGCTCTTCCCCTCAG
Seq C2 exon
GGAACGTGATGTCCTCTTCCCAGGGTACACACACCTGCAGAGGGCTCAGCCGATCCGCTGGAGCCACTGGATCCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015314:ENSBTAT00000020365:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0020615=Lyase_1=FE(10.8=100)
A:
NA
C2:
PF0020615=Lyase_1=FE(8.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]